Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0901 |
Symbol | |
ID | 6162216 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 965441 |
End bp | 966148 |
Gene Length | 708 bp |
Protein Length | 235 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641663651 |
Product | two component LuxR family transcriptional regulator |
Protein accession | YP_001789938 |
Protein GI | 171057589 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGACCC AGGCCAGCCC GAACCCGCTG CACGATCTGC ACATCCTGAT CGTCGACGAC CACGTGATCG TGCGCGAAGG GCTGCAGCGC ATCCTCGAAG CCACCGGCGC GGGCTGGGTG GTGGCCGAGG CCAGCAGCGG CTTCCAGGCG CTCGAGGTGA TGCGCCACCA GCCGATCGAT CTGGCGATCG TCGACCTGTC GATGCCGGGC ATGAACGGGC TGGACCTGAT CAAGCGCATC CGCACCGAAT TCCCGCGGGT GCGCGTGCTG GTGCTGAGCA TGCATGCCGA GGAGCAGTAC GCCATGCGGG CGTTCAAGGC CGGTGCCAAC GGCTACGTGA CCAAGGACGG CGCATCGGCC GAGCTGGTCA ACGCCGTGCG CAAGGTCGCC ACCGGCGGCG CCTACGTCAC CGCCAGCCTG GCCGAGCGGG TGGTGCTGCA GCTCAACGGC GCGACCACCG CGCCGGGTCA CGCACAGCTG TCGGACCGCG AGCTCGAGGT GCTGCGCCGC ATCGTCGCCG GCGAGCGGAT CACCGACATC GCCGAGGCGC TGCACCTGTC GGTCAAGACC GTCAGCACGC ACAAGAGCCG CATCCAGGAG AAGCTGCAGC TGCCCACCAT GGCCGCGCTG ATCCGCTACG GCATGGCGCA CGGCCTGGCT CAGCGCGACG ACGAGCCGGG GCTCGATCTG GCCGAGCATC GGCCCTGA
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Protein sequence | MTTQASPNPL HDLHILIVDD HVIVREGLQR ILEATGAGWV VAEASSGFQA LEVMRHQPID LAIVDLSMPG MNGLDLIKRI RTEFPRVRVL VLSMHAEEQY AMRAFKAGAN GYVTKDGASA ELVNAVRKVA TGGAYVTASL AERVVLQLNG ATTAPGHAQL SDRELEVLRR IVAGERITDI AEALHLSVKT VSTHKSRIQE KLQLPTMAAL IRYGMAHGLA QRDDEPGLDL AEHRP
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