Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0793 |
Symbol | |
ID | 6161147 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 854163 |
End bp | 855083 |
Gene Length | 921 bp |
Protein Length | 306 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641663543 |
Product | inner-membrane translocator |
Protein accession | YP_001789830 |
Protein GI | 171057481 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.901447 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGCAA CGCTGCTGTT GGCTCAGCTG CTCAACGGCC TGCAGTACGG CGTCCTGCTG TTCCTGCTGG CGGCGGGCCT GACGCTGGTG TTCGGGATCA TGAGCTTCGT GAACCTGGCC CATGGCTCTC TGTACATGCT GGGCGCCTAT GCGGCAGCGA TTGCCTATGA CGCCACGGGC TCCTTCGTGC TGGCGATTCT GGCGGCCATG GGCACAGCCT TGCTGATCGG CCTGGTGCTG GAGGTGTCGA TCGTCTCGCG CCTGTATCGG CGAGATCACC TCGACCATGT GCTCGCGACC TTCGGACTCG TGATGTTCTT CAACGAGATG GTGCGGATGG TGTGGGGACC ACAACCCCTG TTTGTCCAGG TGCCGGAGGT GCTGAGCGGG ACGGTCGATA TCGTCGGGTT CAGCTACCCG TCCTATCGCT TCGCCATCAT CTTCACCGGA TTGCTGGTCG CGGTGGGCTC ACATCTGCTC ATCAACAAGA CGCGCATCGG CATGCTGATC CGCGCTGGCG CTCAGAACCC GCAACTGGTC GGTGCCCTCG GCGTGAACAT CGGCCTGCTC AATGCCATGC TCTTCGGTGT GGGCGCCATG CTCGCCGGCC TGGCAGGGGC GATGGCCGGT CCCGTGCTGT CGGTGCAATC GGGCATGGGC GAACCGGTAC TGATCACCAC GCTGGTGGTG ATCGTGATCG GCGGCATCGG TTCTGTCAGC GGCGCGCTTT ACGCCGCACT CATCGTCGGC CTGGTGGATA CGCTCGGACG GGTGTTCCTG CCCCTGCTGC TGCGGCAGGT CGCCGAACGC TCGATCGCCG ACGCGGCCGG CCCGGCACTG GCCTCGATGA GCATCTACCT GCTGATGGCG CTGGTCCTCG CACTGCGCCC TCAGGGTCTC TTTCCCGCCC GTCGCAGCTG A
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Protein sequence | MSATLLLAQL LNGLQYGVLL FLLAAGLTLV FGIMSFVNLA HGSLYMLGAY AAAIAYDATG SFVLAILAAM GTALLIGLVL EVSIVSRLYR RDHLDHVLAT FGLVMFFNEM VRMVWGPQPL FVQVPEVLSG TVDIVGFSYP SYRFAIIFTG LLVAVGSHLL INKTRIGMLI RAGAQNPQLV GALGVNIGLL NAMLFGVGAM LAGLAGAMAG PVLSVQSGMG EPVLITTLVV IVIGGIGSVS GALYAALIVG LVDTLGRVFL PLLLRQVAER SIADAAGPAL ASMSIYLLMA LVLALRPQGL FPARRS
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