Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0665 |
Symbol | |
ID | 6163899 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 719852 |
End bp | 720454 |
Gene Length | 603 bp |
Protein Length | 200 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641663416 |
Product | rhomboid family protein |
Protein accession | YP_001789705 |
Protein GI | 171057356 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 63 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCCAGC TTCCTCCCGT CACCAAGGCG CTGATGCTGA TCTGCACAGC GATGTTCTGT GTCCAGCTGC TGTTCGGGTC GTGGCTGGAG GGCCTGTTCG CGTTGTGGCC GCTCGGCAGC GGGCTGTTCA TGCCCTGGCA GCCGCTGACC CATGCCTTCC TGCATGGCGA CCCGCTGCAC CTGTTCTTCA ACATGTTCGG CCTGTGGATG TTCGGCTCCG AGATCGAGAT GATCTGGGGC CGCAAGCGCT ACTGGCATTT CCTGCTCGCC AGTGCCGTGG CCGGTGCGGT GGCGCAGATG CTGGTGTCGC TGCTCGGCAT TCCGATGGGG CCGACCGTCG GTGCTTCGGG TGCGCTGTAC GGCCTGCTGC TGGCCTTCGG GATGATGTTT CCCGAGCGCA TCATCATGCC GCTGTTCCCG CCGATCCCGA TGAAGGCGAA GATCTTCGTC GTGGTGTTCG GCGGCATCGC GCTGCTGTCG GGCATCTTCA GCCCGACCGG GGGTGTCGCC CACTTCGCCC ACCTCGGCGG CATGCTCGGC GGCTGGCTGA TGATCCGCTA CTGGCGCGGT CAGGCGCCGT TCCCCTCGCG CCGCCGGCGC TGA
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Protein sequence | MPQLPPVTKA LMLICTAMFC VQLLFGSWLE GLFALWPLGS GLFMPWQPLT HAFLHGDPLH LFFNMFGLWM FGSEIEMIWG RKRYWHFLLA SAVAGAVAQM LVSLLGIPMG PTVGASGALY GLLLAFGMMF PERIIMPLFP PIPMKAKIFV VVFGGIALLS GIFSPTGGVA HFAHLGGMLG GWLMIRYWRG QAPFPSRRRR
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