| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0590 |
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| Symbol | |
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| ID | 6159699 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 637381 |
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| End bp | 638040 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641663340 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_001789630 |
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| Protein GI | 171057281 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0419315 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCGAC GCCAGTACGA CCTGATCGTG TTCGATTGGG ACGGCACCCT CTTCGACTCC
ACCGCACTGA TCGTGCGCAG CATCCAGGCC GCCAGCCGGG ATCTGGGCGT GGCCACACCG
TCGGATCAGG ACGCCGCCTA CGTGATCGGC CTGGGCCTGC AGGAAGCGCT GCAGCACGCC
GTGCCGGGGC TCGCCGAGGA ACGCTATCCC GAACTGGTGC AGCGCTACCG CCACCACTAC
TTCAAGGACC AGCACGCCAT CACGCTGTTC GACGGCGTGC CCGAGCTGCT GGAGGCGCTG
CGCGAGCGCC AGCACAGCCT CGCGGTGGCC ACCGGCAAGA GCCGCCGCGG GCTCGACGAG
GCGCTGCAGA TTTCCGCCCT GAACCGCTAC TTCGACGCCA CCCGCACCGC CGACGAAACC
CGCTCCAAGC CGCATCCCCA GATGCTGCAG GAGCTGATGG CCGAGCTGGG GGTTGAACCC
GAGCGGACGC TGATGATCGG CGACACCACC CACGACCTGC AGCTCGCCAG CAATGCCGGC
GCCGCCAGCG TCGCGGTCTC CTACGGCGCA CACGAGATCG AGCAGCTGCA CGAACACGCG
CCGCGCCACG TCGCCCACAG CGTGGCCGAA CTGCGCAGCT GGCTGCTGCA GCACGGCTGA
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| Protein sequence | MRRRQYDLIV FDWDGTLFDS TALIVRSIQA ASRDLGVATP SDQDAAYVIG LGLQEALQHA
VPGLAEERYP ELVQRYRHHY FKDQHAITLF DGVPELLEAL RERQHSLAVA TGKSRRGLDE
ALQISALNRY FDATRTADET RSKPHPQMLQ ELMAELGVEP ERTLMIGDTT HDLQLASNAG
AASVAVSYGA HEIEQLHEHA PRHVAHSVAE LRSWLLQHG
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