| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0588 |
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| Symbol | |
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| ID | 6159890 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 635885 |
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| End bp | 636907 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641663338 |
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| Product | peptidase S49 |
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| Protein accession | YP_001789628 |
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| Protein GI | 171057279 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.0721247 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCTCCG AAGACGACAC CCCGACCTCG CCCGCCACAC CGGTGCCCGA GGCGTCCCGC
CCTGCCGCGC CGAGCGTGGC CCCTGCGGCC CCGAGCGCAC GCAGCGCCAC CGACACCGTG
CTCGAGCAGT TTGCCCACGA GTACATCCGC GAGCGCCGCA ACGCCAGGCG CTGGAGCCTG
ACGCTGCGCC TGGGCTGGCT GCTGCTGTTC GCCCTGGTGG CCTGGGGCCT GCTGACGCAG
AACAACCACG CCAGCGCGCC CAACGGCCCG CACACCGCCC TGGTCGAACT GCGCGGCGAG
ATCGCCGTCG ACACCGAAGC CAGCGCCGAC GTGCTGCTGT CGGGCCTGCG CAGCGCCTTC
GAGGACAGCG GCGCGCAGGC GGTGGTGATC CGCATCAACT CGCCGGGCGG CAGCCCGGTG
CAGGCCGGCA TCATCCACGA CGAAATCCTG CGCCTGAAGG CCAAGCACGA CAAGGAGGTC
TACGCCGTGG TCGAGGAGAG CTGCGCCTCG GGGGCCTATT ACGTGGCGGT GGCGGCCGAC
TCGATCTATG TCGACAAGGC GTCGATCGTC GGCTCGATCG GCGTGCTGAT GGACGGTTTC
GGTTTCACCA GCCTGATGGA AAAGCTCGGC GTCGAACGCC GCATGATCAC CGCCGGCAGC
AACAAGGGCA TGCTCGATCC GTTCTCGCCG CTGTCCGAAT CGCAGCGCGC CTTCGCCCAG
TCCATGCTCG ACCAGATCCA CCAGCAGTTC ATCAAGGTCG TCAAGGATGG CCGCGGCGAA
CGGTTGAAAG AGACCCCCGA AACCTTCTCC GGGCTGTTCT GGAGCGGCGA GGAAGCGGTC
CGGCAGGGCC TGGCGGACGG TTTCGGCAAC CTCGAGTTCG TGGCCCGCGA GATCGTCAAG
GCCGAGGAAG TGATCGACTA CACGCCGCAC GAGAACGTGG CCGAACGGCT GGCCAAGCGA
TTCGGTGCCG CCGTGGGCGA AGGCGCCGTC AAGGCGCTGC GCAACCTGCC GCAGCTCCAC
TGA
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| Protein sequence | MSSEDDTPTS PATPVPEASR PAAPSVAPAA PSARSATDTV LEQFAHEYIR ERRNARRWSL
TLRLGWLLLF ALVAWGLLTQ NNHASAPNGP HTALVELRGE IAVDTEASAD VLLSGLRSAF
EDSGAQAVVI RINSPGGSPV QAGIIHDEIL RLKAKHDKEV YAVVEESCAS GAYYVAVAAD
SIYVDKASIV GSIGVLMDGF GFTSLMEKLG VERRMITAGS NKGMLDPFSP LSESQRAFAQ
SMLDQIHQQF IKVVKDGRGE RLKETPETFS GLFWSGEEAV RQGLADGFGN LEFVAREIVK
AEEVIDYTPH ENVAERLAKR FGAAVGEGAV KALRNLPQLH
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