| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0562 |
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| Symbol | |
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| ID | 6162654 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 610517 |
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| End bp | 612157 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641663311 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001789602 |
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| Protein GI | 171057253 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3845] ABC-type uncharacterized transport systems, ATPase components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.136503 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCAGCGC CCGCTGTCCG CCTGATCGGC ATCCACAAGC GCTTCGGCGC GGTGTTGGCC
AACCGCGACG TCACCTTCGA CGTGGCGGGC GGCAGCATCC ACGGGCTGAT CGGCGAAAAC
GGCGCCGGCA AGTCGACGCT GATGGGGGTG CTGTACGGCC TGCACCCGCC CGACGCCGGC
CGCATCGAGA TCGACGGCCG CGCACTCGCG CTGGGCAGCG CGCACGACGC CATCGCCGCG
GGCATCGGCA TGGTGCATCA GCACTTCATG CTGGTGGAGC GTTTCACGGT GCTCGAGAAC
ATCGTGCTCG GCGCCGAGGG CGGCTGGCAA CTCGACCTGA GCCTGGCCCG CGCGCGCCGC
GCGGTGCTGC GGCTGGCGCA GGAATTCGGC CTCGTGGTCG ACCCCGATGC GCGCGTGCGC
GACCTGCCGG TGGGCGTGCT GCAGCGGGTC GAGATCCTGA AGGCGCTGTA CCGCGGCGCG
CGTGTGCTGA TCCTCGACGA GCCGACCGGC GTGCTGACGC CGCAGGAAAC CGAGCAGCTG
ATGCGCATGC TGCGCGCGCT GAAGGCACGT GGCACCACGG TGCTGCTGAT CACGCACAAG
CTGAAAGAGG TGCTGGCGAT CACCGACCGC GTCACGGTGA TGCGCGCCGG CCAGGTCATC
GCCACCCGCG AGACCGCCGC CTGCAGCGAG GCCGAGCTGG CCGAGCTGAT GGTCGGCCGC
CAGGTGCGGC TGGGCGAGGC GCACCGGCCG GTCGAACGCG GCGAGCCGGT GCTCGACGTC
GCCTCGCTCG GCTGGCGCGA CGCGCTGGGT GTGGCGCGGC TCGACGGCAT CGACCTGCGC
CTGCATGCGC GCGAGATCGT CGGCATCGCC GGTGTCTCGG GCAACGGCCA GAGCGAGCTG
CTCGGTCTGC TCGGTGGCCT GCTGCCGCTG CAGCAGGGCC GCCTGCAGAT CACCGGGGCG
CGTGAACTGG AGCCGGTGCA TCGCTTCGAC GCCCATCACC CGGCCGACCC GCACACCTTG
CGTGCGCTGG GCGTGGCGCA TGTGCCCGAG GATCGCCACC GGCTCGGCCT GGTGCTGCGT
TTCGCGGCCT GGGAATCGGC CGCGCTGGGT TATCAGGACG ACCCGCAGAT TGCGCTCGGC
CCGCGCTGGA GCGGCTTCAT GGACCACCGC CTGATGCGCA GCCGCTGCCG CCAGATGATG
GAGGCCTTCG ACGTGCGCCC GCGCGATGTC GAGCTGGCGA GCGCCAAGTT TTCGGGCGGC
AACCAGCAGA AGCTGATCAT CGCGCGCGAG TTCGAACGCG CGCCACGCGT GCTGCTGATC
GGCCAGCCCA CCCGCGGCGT CGACATCGGC GCCATCGAGA CCATCCACCG CGCCATCCTG
GCGCTGCGCG ACGCCGGCTG CGCGGTGCTG CTGGTGTCGA CCGAACTCGA CGAGATCCTG
GCGCTGGCCG ACCGCATCGT CGTGATGTGC CAGGGCCGCA TCACCGGCGA GTTCGAGCGT
GCCGACGCCG ACGAGGCGCG CATCGGCATC TGCATGGGGC AGAGCGAGAC CTCGGCCTTC
GACTCCACGG TGAGCGCGGG CGACGACGTG TCGGCGCCCG ATCTGCCGCC GGTCGAAGGC
CATGCGGAGG ATCGGCGATG A
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| Protein sequence | MSAPAVRLIG IHKRFGAVLA NRDVTFDVAG GSIHGLIGEN GAGKSTLMGV LYGLHPPDAG
RIEIDGRALA LGSAHDAIAA GIGMVHQHFM LVERFTVLEN IVLGAEGGWQ LDLSLARARR
AVLRLAQEFG LVVDPDARVR DLPVGVLQRV EILKALYRGA RVLILDEPTG VLTPQETEQL
MRMLRALKAR GTTVLLITHK LKEVLAITDR VTVMRAGQVI ATRETAACSE AELAELMVGR
QVRLGEAHRP VERGEPVLDV ASLGWRDALG VARLDGIDLR LHAREIVGIA GVSGNGQSEL
LGLLGGLLPL QQGRLQITGA RELEPVHRFD AHHPADPHTL RALGVAHVPE DRHRLGLVLR
FAAWESAALG YQDDPQIALG PRWSGFMDHR LMRSRCRQMM EAFDVRPRDV ELASAKFSGG
NQQKLIIARE FERAPRVLLI GQPTRGVDIG AIETIHRAIL ALRDAGCAVL LVSTELDEIL
ALADRIVVMC QGRITGEFER ADADEARIGI CMGQSETSAF DSTVSAGDDV SAPDLPPVEG
HAEDRR
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