| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0556 |
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| Symbol | |
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| ID | 6163359 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 603234 |
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| End bp | 605213 |
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| Gene Length | 1980 bp |
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| Protein Length | 659 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641663305 |
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| Product | ATP-dependent DNA helicase RecQ |
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| Protein accession | YP_001789596 |
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| Protein GI | 171057247 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0514] Superfamily II DNA helicase |
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| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACCAC CGATCCCCCA CGACGCCAGC CCCGCCCTGC AAGTGCTCGG CGAAGTGTTC
GGCTACAGCG CCTTCCGCGG CCAGCAGCAG GCCATCATCG AGCATGTGGT GGCCGGCGGC
GACGCGCTGG TGCTGATGCC CACCGGCGGC GGCAAGAGCC TGTGCTACCA GGTGCCGGCG
ATCGTGCGAC AGCGCGCCGG CCAGGGCGTT GCGGTGGTCG TCAGCCCGCT GATCGCGCTG
ATGCACGACC AGGTCGGCGC GCTCGAGGAA GTCGGCGTGC ACGCCTCCTT CCTCAACTCG
ACGCTCGACA ACGCCCAGGC CCAGGCGATC GAGCGCGAGC TGCTGTCGGG CCGCCTGACG
ATGCTCTACG TCGCACCCGA GCGGCTGCTG ACGCCGCGCC TGCAGGGCAT GCTGGCGTCG
CTGCACGAGC GCGGCCGGCT GTCGCTGTTC GCGATCGACG AGGCGCATTG CGTCAGCCAA
TGGGGCCACG ATTTCCGCGA GGATTATCTG CAGCTGTCGG TGCTGCACGA GCAGTTTCCG
GGCGTGCCGC GCATCGCGCT CACCGCCACC GCCGACGACC ACACCCGCGC CGACATCGTC
GAGCGGCTGC AGCTGCAGGA CGCGCGGCTG TTCGTCAGCA GCTTCGACCG GCCCAACATC
CGCTACACGC TGGTCGAGAA GGTCAAGCCG CGCGACCAGC TGCTGCGGTT CATCCGCGAC
GAACACGAAG GCGAAGCCGG CATCGTCTAC TGCGGCAGCC GCAAGAAGGT GGAAGAGACG
GCGAGCTGGC TGGCCGAGCA GGGTGTCGAT GCGCTGCCGT ATCACGCCGG GCTGGACGCC
GAGGTGCGGC GTCGCCATCA GGATCGTTTC CTGCGCGAGG ACGGCCTGGT GATGGTGGCG
ACGATCGCCT TCGGCATGGG CATCGACAAG CCCGACGTGC GCTTCGTGGC GCACCTGGAT
CTGCCCAAGA ACATCGAAGG TTATTACCAG GAGACCGGCC GCGCCGGCCG CGACGGCGAG
GCCGCAGACG CCTGGATGAC CTACGGCCTG GCCGACGTCG TCAACCAGCG CCGCATGATC
GACGAGAGCC CGGCGGCCGA GGAATTCAAG CGCGTGCAGC GCGGCAAGCT CGACGCCCTG
CTGGCGCTGG CCGAGGCGCA CGACTGCCGG CGCGTGCGGC TGCTGAGCTA TTTCGGCGAA
CAGTACCGCG AGCCGCCCGA CGTCGGGCCG CCCCAAGGCG GGCGGAGCCC CCTCGGGGGG
CAGGGAGTGC CCGAAGGGCT GACCGTGGGG GCACGATGCG GCAACTGCGA CAACTGCCTC
AATCCGCCGT CGATCTGGGA TGCCACCGAG TCGGCGCGCA AGCTGCTTTC GTGCATCTAC
CGCTTCCAGC AGCACGGCCA GCAGAACCAC GGCGCACGCA GCTTCGGCGC CGGCCACCTG
ATCGACGTGC TGCGTGGCAA GGCCAGCGAC AAGGTGGCGC AATACGGCCA CGAGCGCCTG
AGCACCTGGG CGGTGGGCGC CGACATGAGC GAGCAGCAGT GGCGCGCCGT GCTGCGCCAG
CTGGTGTCGC TGGGCCACGT CGTCGCCGAG GGCGAATACA ACACGCTGGC ACTGACCGAC
AGCGCGCGGG CGGTGCTCAA GGGCGACGTT TCGCTGCGCA TGAAGACGCC CGCCGAGCCG
ACCACCAAGC GCGGTCGCAC GGTGCGCGGC GCCGGCCACG GCGGGGCCCG CGAGGTGGCG
CCGCCGATCG AGCTCAGCGC CTCGGCCCAG CGCCGTTATG ACGCGTTGCG CGAGTGGCGG
GCCGAGGTCG CGCGCGAGCA CAACCTGCCG TCCTACGTCG TCTTCAACAA CGCCACGCTG
GCCGAGATGG CGCGCCGCGA ACCCACCAAC CTGGCCGAGA TGGGCGAGAT CAGCGGCGTG
GGCGCCAAGA AGCTCGAGGC CTACGGCACC GAGATCCTGC GGGTGCTGGC CCACAGTTGA
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| Protein sequence | MTPPIPHDAS PALQVLGEVF GYSAFRGQQQ AIIEHVVAGG DALVLMPTGG GKSLCYQVPA
IVRQRAGQGV AVVVSPLIAL MHDQVGALEE VGVHASFLNS TLDNAQAQAI ERELLSGRLT
MLYVAPERLL TPRLQGMLAS LHERGRLSLF AIDEAHCVSQ WGHDFREDYL QLSVLHEQFP
GVPRIALTAT ADDHTRADIV ERLQLQDARL FVSSFDRPNI RYTLVEKVKP RDQLLRFIRD
EHEGEAGIVY CGSRKKVEET ASWLAEQGVD ALPYHAGLDA EVRRRHQDRF LREDGLVMVA
TIAFGMGIDK PDVRFVAHLD LPKNIEGYYQ ETGRAGRDGE AADAWMTYGL ADVVNQRRMI
DESPAAEEFK RVQRGKLDAL LALAEAHDCR RVRLLSYFGE QYREPPDVGP PQGGRSPLGG
QGVPEGLTVG ARCGNCDNCL NPPSIWDATE SARKLLSCIY RFQQHGQQNH GARSFGAGHL
IDVLRGKASD KVAQYGHERL STWAVGADMS EQQWRAVLRQ LVSLGHVVAE GEYNTLALTD
SARAVLKGDV SLRMKTPAEP TTKRGRTVRG AGHGGAREVA PPIELSASAQ RRYDALREWR
AEVAREHNLP SYVVFNNATL AEMARREPTN LAEMGEISGV GAKKLEAYGT EILRVLAHS
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