| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0549 |
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| Symbol | |
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| ID | 6164124 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 594158 |
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| End bp | 595384 |
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| Gene Length | 1227 bp |
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| Protein Length | 408 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641663298 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001789589 |
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| Protein GI | 171057240 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCACAG CAGCTGCGGT AGCGGCGAAG AAGATCAAGG ACTTCGTCTT TGAGTGGGAG
GGCCGTGACC GCAACGGCAA GGCCGTGCGC GGCGAGATGC GCGCCGGCGG CGAGGCCATG
GTCAGCGCCA GCCTGCGCCG CCAGGGCATC ATGGTCGTCA AGGTCAAGAA GCGCCGCATC
TCGGGCGGCA AGTCGATCAA GGGCAAGGAC ATCGCGGTCT TCACGCGCCA GCTGGCCACC
ATGCTCAAAG CCGGCGTGCC GCTGCTGCAG GCCTTCGACA TCGTCGCCCG CGGCAGCTCG
AACCCGCGCC TGACGCGCAT GCTGACCGAC ATCCGCGGCG ACGTCGAGAC CGGTACCAGC
CTGTCGGCGG CCTTCCGCCG CCACCCGCTG CAGTTCGACG CGCTGTACTG CAACCTGGTC
GAGGCCGGCG AATCCGCCGG CATCCTGGAG ACCCTGCTCG ATCGCCTGGC CAACTACCAG
GAAAAGACCA TCGAGCTGCA GAACAAGATC CGCTCGGCGC TGATCTATCC GGTGGCGGTG
CTGGTGGTGG CGTTCATCGT GGTCGCGGTG ATCATGATCT TCGTGATCCC GTCGTTCAAG
GACATCTTCA AGTCCTTCGG CGCCGACCTG CCGCTGCCCA CGCTGATCGT GATCGCTATG
TCGGAATTCT TCGTCCAGTA CTGGTTCGCG ATCTTCGGCG GCATCGGGCT GGCGGTCTAC
ATGACGATCC AGAGCTGGCG CCGCTCCGAA CGCATGCAGA TGGCGCTCGA CCGCTTCATG
CTCAAGGTGC CGATCTTCGG CCAGCTGGTG CACAAGGCCG CGGTGGCGCG CTGGGCGCGC
ACGCTGTCGA CCATGTTCGC CGCCGGCGTG CCGCTGGTCG AGGCGCTCGA TTCGGTCGGC
GGCGCGGCCG GCAACGCGGT GTTCGCGCAG GCCACCGAGC AGATCCAGCG CGACGTGTCC
ACCGGCGCGG CGCTGACGTC CTCGATGCAG GCGACCAACA TCTTCCCGAA CATGGTGCTG
CAGATGAGCT CGATCGGCGA GGAATCGGGC TCGCTCGACC AGATGCTCAG CAAGGTAGCC
GACTTCTACG AACAGGAGGT CGACGAGGCC GTCAAGGGCC TGTCGACGCT GATGGAGCCG
ATCATCATCG TCGTGCTCGG CACCATCATC GGCGGCATCG TGGTCTCGAT GTACCTGCCG
ATCTTCAAGC TGGGCCAGGT GGTCTGA
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| Protein sequence | MATAAAVAAK KIKDFVFEWE GRDRNGKAVR GEMRAGGEAM VSASLRRQGI MVVKVKKRRI
SGGKSIKGKD IAVFTRQLAT MLKAGVPLLQ AFDIVARGSS NPRLTRMLTD IRGDVETGTS
LSAAFRRHPL QFDALYCNLV EAGESAGILE TLLDRLANYQ EKTIELQNKI RSALIYPVAV
LVVAFIVVAV IMIFVIPSFK DIFKSFGADL PLPTLIVIAM SEFFVQYWFA IFGGIGLAVY
MTIQSWRRSE RMQMALDRFM LKVPIFGQLV HKAAVARWAR TLSTMFAAGV PLVEALDSVG
GAAGNAVFAQ ATEQIQRDVS TGAALTSSMQ ATNIFPNMVL QMSSIGEESG SLDQMLSKVA
DFYEQEVDEA VKGLSTLMEP IIIVVLGTII GGIVVSMYLP IFKLGQVV
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