Gene Lcho_0528 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0528 
SymbollpxC 
ID6161281 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp575241 
End bp576176 
Gene Length936 bp 
Protein Length311 aa 
Translation table11 
GC content68% 
IMG OID641663277 
ProductUDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 
Protein accessionYP_001789568 
Protein GI171057219 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase 
TIGRFAM ID[TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCAAGC AACGCACCCT CAAGTCGCTG ACCCGCGCCG TCGGCGTCGG TCTGCACAGT 
GGCAAGAAGG TCGAACTGAC GCTGCGCCCC GCACCGCCCG ACACCGGCAT CGTGTTCCGC 
CGCATCGACC TGCCGCAGCC GGTGGACATC CCCGTGCGCG CCGAGGCGGT CTGCGATGCG 
CGCATGGCGA CCACGCTCTC GCCCGGCGGA GACCCCGGCG CACCCAAGGT CAACACGGTC 
GAGCACCTGA TGTCGGCCTG CTGCGGCCTG GGCCTGGACA ACCTCTACAT CGACATCACC 
GCCGAGGAAG TGCCGATCCT CGACGGCTCG GCGGCGTCCT TCGTGTTCCT GCTGCAGAGC 
GCGGGCATCG AGCTGCAGAA CGCGCCCAAG CGCTTCCTGC GCGTGCTCAA GCCGGTCGAG 
GTGCGGCAGG GCGAGGGCGA CCGGCTGGTC TGGTCGCGGC TCGAACCGCA TCACGGCTAC 
AAGCTCACCT TCGAGATCGA CTTCGCCCAC CCCGCGGTCG ACCAGACCGG CCAGCGTGTG 
GTCTTTGACA TGGGCTCGGG CCAGTACAAG CGCGACATCG CGCGCGCACG CACCTTCGGT 
TTCACCAAGG ACCTGGAGCT GATGCGCTCA CGCGGGTTGA CGCTCGGTGG CTCGATGGAC 
AACGCCATCG TGGTCGACGA CTACCGCGTG CTCAACGCCG AGGGGCTGCG CTACGACGAC 
GAGTTCGTCA AGCACAAGAT CCTCGACGCG ATCGGCGATC TCTACCTCTG CGGCATGCCG 
CTGCTGGCCA GCTACACCGC CTTCAAGAGC GGCCACGCGA TGAACAACCG GCTGCTGCGC 
GCCCTGCTGG CCGACCCGAC CGCCTGGGAA ATCGTCACCT TCGAGGACGA GAAGCTCGCG 
CCGCAGGGCA TGGCCGAACT GGCGCCGGCC TGGTGA
 
Protein sequence
MLKQRTLKSL TRAVGVGLHS GKKVELTLRP APPDTGIVFR RIDLPQPVDI PVRAEAVCDA 
RMATTLSPGG DPGAPKVNTV EHLMSACCGL GLDNLYIDIT AEEVPILDGS AASFVFLLQS 
AGIELQNAPK RFLRVLKPVE VRQGEGDRLV WSRLEPHHGY KLTFEIDFAH PAVDQTGQRV 
VFDMGSGQYK RDIARARTFG FTKDLELMRS RGLTLGGSMD NAIVVDDYRV LNAEGLRYDD 
EFVKHKILDA IGDLYLCGMP LLASYTAFKS GHAMNNRLLR ALLADPTAWE IVTFEDEKLA 
PQGMAELAPA W