| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0489 |
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| Symbol | |
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| ID | 6160355 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 529236 |
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| End bp | 531053 |
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| Gene Length | 1818 bp |
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| Protein Length | 605 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641663238 |
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| Product | O-antigen polymerase |
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| Protein accession | YP_001789529 |
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| Protein GI | 171057180 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3307] Lipid A core - O-antigen ligase and related enzymes |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.091013 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCTCCA ACTACCCGCC AGTCACGTCG CCGTGGCAGC CCGACGGCAT GCTGCTGGCC
GCCTTGTCGG CCGTCGCCCT GCCGATGCTG CTGGCGCCCA CCGTCTCGCC CACCTCCACC
TTCTTCAACC AGCTGTGCGC CTTTGCCGGC ATGGCGCTGT GGCTGGGGCT GTGGGTCGGC
CGCGCGACGC CGGTGCCGAT CCGGCGCATG CCGGGTGCCC TGCGCGGCCT GCTGCTGCTG
CTGGTGATGC TGATCGTGGC GCAGGGCCTG ACCGAGGCGC CCTTCGGGCA GCGCCTGATG
CCGATCGCCA CCTTGTCGCT GGGCGCCGCG CTGGCGCTGG CGGCGGGGCT GTCGGCGCAG
TCCGGGCGTG ACGATGCGCT GTGGTCGGGC CTGCTGGTCG CGCTGCTGGC GGCCGGGCTG
CTGAGCGTCG GGATCTCGCT GCTGCAGGTG TTCGCGCCCA CCTGGACCGA TGGCGTCTGG
GTCGCGATGC CGACCACGCC CGGGCGCGCC ATCGGCAACA TGCGCCAGCC CAATCAGCTG
TCGACGCTGC TGCTGTGGGC CTGTGCGGCG GCGGTGTGGC TGTCGCAGCG CCATCGCTGG
TTCCTGCGCG AACTGGCCGC CGTGCTGGTG CTGCTGGTGC TGGCCGACGT GCTGACGGCC
TCGCGCACCG GCATGGTCGG GGTGCTGATG CTGGCGGGCT GGGGCGCCAT CGACCGCCGC
CTGCCGGGCC GCGTGCGGCT GCTGCTGCTG GCGATGCTGG CGGTCTACGC GCTCGGCTGG
TGGGGCATGG AGCAGTGGTC GGCCAGCACC GGCCAGTTCT TCTACGGCGA CGACCAGATC
AAGAAGACGC TGCACGGCGA CCCGAGCAGT TCGCGCGGGC GCATCTGGGC CAACACGCTG
GCGCTGATCG CGCAGCATCC GTGGACCGGC GTCGGGCCGG GGGCCTTCAA CTTCGTCTGG
TCGATGACGC CGTTCCCGGA TCGGCCGGTG GCGTTCTTCG ATCACAGCCA CAACCTGCTG
CTGCAGCTGG CGGTGGACTC GGGCCTGCCG TTTGCTGCGG CGGTGCTGGC GCTGGCGCTG
TGGGTGGCGT GGCGCAGCCG CGCGGCGTTC ACGCAGGCCG ACGACCTGCG CGCCGGCGGG
GCGCGCTGCG CGGCCTTCAT GCTGGCGCTG GTGCTGGTGC ACAGCCTGCT CGAGTACCCG
CTGTGGTACG CGTATTTCCT GCTGCCGACG GCGCTGATGG CGGGCTGGAT GACGGGCCTG
GTGCCGCCGC CGGCGTCCGC CGATCGGGTC GGCGAACTGG ACGCCGGGTG GCGCCGGCCG
CCGACGCTGG CGCGCTCGGT GTGCGGCCTG GTGTCGGCGC TCGGCATGCT GGCGTCGGGC
TGGGCGGCGC ACCAGTACTA CACGGTGGCG GTGATCTTCG AGCCGGACGT GTCGATCGGC
ATCCCCGAAG CCCTGCCGCA GCGCATCGCG CGCGGTCAGC GCAGCATCCT GTTCGGCCAT
CACGCCGATT ACGCCGAGGT CACGATGGCG CCGCAGCCCG AGCAGGTGTT CGACGCCTTC
AGGCGCCCGC TCCATCACCT GCTCGACACC CGCCTGATGA CGGCCTACGC GCGGGCACTG
GCCGCGCGCG GCGACGTCGA GCGCTCACGC CACGTGGCGG CGCGCCTGCG CGAGTTCCGC
AATCCGGCGT CGGACGCGTT CTTCGCACCC TGCCAGGCCG CCGCGCTGCC GGCCTCGGGC
GCTGCGGCGG TGGCGGCCAG TGTGCCGTTC CAGTGCGAGC CCGATCCGCG CTGGCCGGCC
GAGGCGATGC ACCCCTGA
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| Protein sequence | MSSNYPPVTS PWQPDGMLLA ALSAVALPML LAPTVSPTST FFNQLCAFAG MALWLGLWVG
RATPVPIRRM PGALRGLLLL LVMLIVAQGL TEAPFGQRLM PIATLSLGAA LALAAGLSAQ
SGRDDALWSG LLVALLAAGL LSVGISLLQV FAPTWTDGVW VAMPTTPGRA IGNMRQPNQL
STLLLWACAA AVWLSQRHRW FLRELAAVLV LLVLADVLTA SRTGMVGVLM LAGWGAIDRR
LPGRVRLLLL AMLAVYALGW WGMEQWSAST GQFFYGDDQI KKTLHGDPSS SRGRIWANTL
ALIAQHPWTG VGPGAFNFVW SMTPFPDRPV AFFDHSHNLL LQLAVDSGLP FAAAVLALAL
WVAWRSRAAF TQADDLRAGG ARCAAFMLAL VLVHSLLEYP LWYAYFLLPT ALMAGWMTGL
VPPPASADRV GELDAGWRRP PTLARSVCGL VSALGMLASG WAAHQYYTVA VIFEPDVSIG
IPEALPQRIA RGQRSILFGH HADYAEVTMA PQPEQVFDAF RRPLHHLLDT RLMTAYARAL
AARGDVERSR HVAARLREFR NPASDAFFAP CQAAALPASG AAAVAASVPF QCEPDPRWPA
EAMHP
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