Gene Lcho_0472 details

Gene Information

• Locus tag: Lcho_0472
• ID: 6162945
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 511078
• End bp: 511548
• Gene Length: 471 bp
• Protein Length: 156 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 641663221
• Product: putative PTS IIA-like nitrogen-regulatory protein PtsN
• Protein accession: YP_001789512
• Protein GI: 171057163
• COG category: [G] Carbohydrate transport and metabolism; [T] Signal transduction mechanisms
• COG ID: [COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 62
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACCGTC TCGCCGCCAT CCTGCCCGCC AGCAATGTGC TGGTGCAAGT GGATGCGTCC 
AGCAAGAAAC GCGCATTCGA GCAGGCTGGC TTGCTGTTCG AGAATCAGCA CGCGATCGCA 
CGTGCCACCG TCACCGACAA CCTGTTCGCG CGTGAGCGAC TGGGCTCGAC CGGCCTGGGT 
CACGGCGTGG CGATTCCGCA TGGCCGCATC AAGGGTCTGA AGAATCCGCT GGCTGCGGTG 
CTGCGTGTCG CCCAGCCGAT CGCCTTCGAG GCGCCGGATG ACGAACAGGT CACCTTGCTG 
ATCTTCCTGC TGGTGCCCGA GGCGGCCACT CAGCGCCATC TCGAGATCCT GTCCGAGATT 
GCCGAACTGC TGTCCGACCG CGAGTTGCGC GAACGTCTCA AGACCGAGCC TGATCCGGCC 
AAGGTGCACG AGATGATCTC CCGCTGGGAG CCGCTGAAGT CCGTCGCCTG A 

 

Protein sequence

MNRLAAILPA SNVLVQVDAS SKKRAFEQAG LLFENQHAIA RATVTDNLFA RERLGSTGLG 
HGVAIPHGRI KGLKNPLAAV LRVAQPIAFE APDDEQVTLL IFLLVPEAAT QRHLEILSEI 
AELLSDRELR ERLKTEPDPA KVHEMISRWE PLKSVA