Gene Lcho_0468 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0468 
Symbol 
ID6160927 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp507876 
End bp508649 
Gene Length774 bp 
Protein Length257 aa 
Translation table11 
GC content70% 
IMG OID641663217 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001789508 
Protein GI171057159 
COG category[R] General function prediction only 
COG ID[COG4221] Short-chain alcohol dehydrogenase of unknown specificity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones72 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCCTCA ATCCCAAGCT CACCGACTGG CATGGCAAGG TGGTCTGGCT GGTGGGCGCG 
TCCAGCGGCA TCGGCCGCTC GACCGCCGAG CGGCTGGCCG AACGCGGTGC GCGCGTGGTG
GTGTCGGCGC GCAACGTGCA GGCGCTGCAG CAGTTCACCG ACCGCTATCC GAAAAGCCTG
GCGCTGCCGG TCGACGTCAC CGATCCCGGC GGCCTGGCCG GTGCGGCCGA TGCGCTGATG
GCGCGCTGGG GTCGGCTCGA TCTGGTGGTC TATTGCGCCG GTCACTACCG CGCCCAGCGC
GCCACCAGCT TCGATCTCGA CGAGATGCTG CGCCACGTGC AGATCAACTA CGTCGGCGCG
CTGCACCTGC TCGACGTCGT GCTGCCGATC CTGCTGAACC AGCGCAGCGG CCACATCAGC
CTGATCTCGA GCGTGGCGGG TTACCGCGGC CTGCCGCAGG GCCTGGCCTA CGGGCCGACC
AAGGCGGCGC TGCACAACCT GGCCGAGACG CTCTACATGG ACCTGCGTGA TCGGGGCGTG
GCGGTGTCGG TGATCAACCC GGGTTTCGTC GAGACGCCGC TGACGGCGCA CAACGAGTTC
CGCATGCCCG CGCTGATCTC GCCGCTGGCG GCGGCCGACG CGATGCTCAA GGGCTGGGCG
CGCGGCGAGT TCGAGATCCA CTTTCCCAAG CGCTTCACGC GCATCCTCAA GCTGCTGGGC
TGGCTGCCGC AGGGCCTGTA CTTTGCCGCG GTGCGCCGCG CCACTGGCCT GTGA
 
Protein sequence
MSLNPKLTDW HGKVVWLVGA SSGIGRSTAE RLAERGARVV VSARNVQALQ QFTDRYPKSL 
ALPVDVTDPG GLAGAADALM ARWGRLDLVV YCAGHYRAQR ATSFDLDEML RHVQINYVGA
LHLLDVVLPI LLNQRSGHIS LISSVAGYRG LPQGLAYGPT KAALHNLAET LYMDLRDRGV
AVSVINPGFV ETPLTAHNEF RMPALISPLA AADAMLKGWA RGEFEIHFPK RFTRILKLLG
WLPQGLYFAA VRRATGL