| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0412 |
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| Symbol | |
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| ID | 6161061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 451356 |
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| End bp | 454517 |
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| Gene Length | 3162 bp |
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| Protein Length | 1053 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641663161 |
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| Product | transketolase |
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| Protein accession | YP_001789452 |
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| Protein GI | 171057103 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0021] Transketolase
[COG0176] Transaldolase |
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| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast
[TIGR00876] transaldolase, mycobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCAC CGACCCGCAC CACCCTCGCC AACGCCCTGC GCGTGCTCGC GATGGACGCC
GTCCAGCAAG CCAACTCCGG CCACCCCGGC ATGCCGATGG GCATGGCCGA CATCGCCGAA
TCGCTGTGGC GCCACACCGT GCGCCACAAC CCGGCGAACC CGAAGTGGCC CAACCGCGAC
CGCTTCGTGC TGAGCAACGG CCACGGCTCG ATGCTGCTGT ATGGCCTGCT GCACCTCACC
GGTTACGACC TGCCGATCGA GCAGATCAAG CGCTTCCGCC AACTGCACAG CCAGACGCCG
GGCCATCCCG AACTCGGCTA CACGCCGGGT GTCGAGACCA CCACCGGCCC GCTCGGCCAG
GGCATCGCCA ACGCGGTCGG CATGGCGCTG GCCGAGCAGC TGCTCGCGGC CGAGTTCAAC
CGCGACGGCC TGCCGGTGGT GGACCACCAC ACCTACGTCT TCCTCGGCGA CGGCTGCCTG
ATGGAGGGCG TGAGTCACGA GGCCTGCTCG CTCGCCGGCA CCTGGGGTCT GGGCAAGCTG
GTGGCGTTCT GGGACGACAA CGGCATCTCG ATCGACGGCC ACGTCGAAGG CTGGTTCACC
GACGACACGC CCGGCCGCTT CGAGGCCTAC GGCTGGCAGG TGATCCGCGC CGTCGACGGG
CATGACCCGG CGGCGCTCGA TGCGGCCATC GCCGCCGCAC GTGCCGAGTC CGCCAAGCCG
ACGCTGATCT GCTGCAGGAC CGTGATCGGC AAGGGCTCGC CCAACAAGGC CGGCACGCAC
GACAGCCACG GCGCGCCGCT GGGCGCGGCC GAGATCGCCG CTTCGCGCGC CGCGCTGGGC
TGGACGCGTG CGCCGTTCGA GATCCCCGCC GACGTCGGCG CCGCGTGGGA TGCGCGTGAA
GCCGGCGCGC TGGCCGAAGC GGCTTGGAAC GAGTTGTTCG TCGCCTACGA ACGCGCGCAC
CCGGCGCTGG CCGCCGAGTT CCGTCGCCGC ATGGCCGGCG AATTGCCCGC CGGCTTTGCC
GATCTGGCCG ATGCCGCGCT CGCCCAGGTC GTCGACAAGG GCGAGACCCT CGCCAGCCGC
AAGGCCAGCC AGAACGCGAT CGCCGCGCTG GTGCCGGCGC TGCCGGAGAT GGTCGGCGGC
TCGGCCGACC TGGCCGGATC GAACCTGACG CTGTGGCCGC AGGCCATTCC GGTGGCGGCG
GCGGAGCAAG CCGGCGCCGG GCCGTCCCAA GCCGGGTTGC AGCCCCCGCG GGGGGCGGAC
GCGGTAGCCC GCGGCCGGGG GTCCTACATC CATTACGGCG TGCGCGAGTT CGGCATGGCG
GCGGTCATGA ACGGGCTGAC GCTGCACGGC GGCCTGCGCA CCTTCGGCGG CACCTTCCTG
ATGTTCAGCG AGTACGCGCG CAACGCGCTG CGCATGGCCG CGCTGATGAA GCTCAACCCG
ATCTACGTCT TCACGCACGA CTCGATCGGC CTGGGCGAGG ACGGCCCGAC GCACCAGCCG
GTCGAGCAGA CTGCCACGCT GCGGCTGATC CCGAACATGG ACGTCTGGCG CCCGGCCGAT
GCGGTCGAGA CGCAGGTGGC GTGGACCGCG GCGATCGAGT CGCGCGATCA CCCGACCAGC
CTGATCCTGA GCCGCCAGAA CCTGCCGCAC AACCTGCGCA GCGCCGAGCA GATCGCGGCG
ATCCGCCGCG GCGGCTACGT GGTGAGCGAA GCCTCGGGGG GGGCCGCCCG CGCCGTGGTC
ATCGCCACCG GCAGCGAGCT GGGCCTGGCG ATCGCCGCGC AGAAGCAGCT GGCCGCGCAA
GGCGTGCCGG TGCGTGTGGT GTCGATGCCG TCGACCCACG TGTTCGACCG GCAGGACGCG
GCCTGGCGCG ACAGCGTCTT GCCCGCCGGC TTGCCGCGTG TGGCGGTCGA AGCGGGCGTG
ACCGACGGCT GGCGCAAGTA CGTCGGGCTC GATGGCGCGG TGGTCGGCAT CGACCGCTTC
GGCGAATCGG CGCCGGCGGG CGAGTTGTTC GCGCTGTTCG GCATCACGGC CGACGCGGTG
GTGGCGGCGA CGCTGGGCGT GCTCGGCGTG TCGGCGCGCG CAGGCAGCCG GGTCGCGCCG
GTGGCGGCGC ACGGCCAGCA GATCTGGCTC GACAAGCTCT CGCGCAGCCT GGTGGCCAGC
GGCGAACTGC AGCGCTGGGT CGACGAGCAC GCGGTGGCCG GCGTCACCAG CAACCCGGCG
ATCTTTGCGC AGGCGCTGGC CGGCGATGCG GCCTACGCGC CGGCGCTGGC CGAGCTGCGT
GGCGTCGAGC CCGATCTGGA GCGCCGCTTC GAGCGGCTCG CCATCCCCGA CGTGCAGGCC
GCCTGCGACG TGCTGCGCCC GCTGTACGAA CGCAGCCGCG GTGAGGCGGG TTACGTCAGT
TTCGAGGTCT CGCCCAGCCT GTCGCGCGAC GGCGCCGGCA CGCTGGCCGC TGCCCGCCGG
CTGTGGGCAC AGATCGCACG CCCGAACGCG ATGATCAAGA TCCCCGCCAC GCCCGAATGC
CTGGAGGCGA TCAGTGCCGC GCTGGCCGAC GGCATCAACA TCAACGTCAC GTTGATGTTC
TCGCGCCGCC ATGCGGAGCA GGTGTTCGCC GCCCAGGCCG AGGGGCTGCG CCGTCGCCAT
GCGGCCGGGC TGGCGGTCGA CCGCGTGCGC TCGGTGGCGA GCGTGTTCGT CAGCCGCGTC
GACGCCAAGG TCGACCCGCT GCTCGAAGCT TCGGCCGACG CGGGCGCGAA GGCCTTGCTC
GGTGAAGTCG CGATCGCCAG CGCCCGCTGC GCTTACGCAC GGTGGCTCGA CCGCTTCGGC
GGCAGCGCCT TCGCCGGCCT GCGGGCCGCC GGCGCGCAGC CGCCGCTGTG CCTGTGGGCG
AGCACCGGCA ACAAGAACCC GGCGTACCGC GACGTGCGTT ACGTCGAGGC GCTGATCGGC
CCGCAGACCG TCAACACCGT GCCCGACGCG ACGCTGGCCG CCTTCGCCGA CCACGGCGAA
ACGGCGCGCA CGCTCGACAC CGATCTGGCC GGCGCGTCGC TCATCGTCGA GCGCGCCGCC
GCGCTCGGCA TCGACCTCGA TGCGATCGGC GAGACGCTGC AGGCCGAGGG CTTGCTGCAG
TTCGAGCAGG CGTTCGAGCG CCTGCTGCAG TCGGTCGCCT GA
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| Protein sequence | MTAPTRTTLA NALRVLAMDA VQQANSGHPG MPMGMADIAE SLWRHTVRHN PANPKWPNRD
RFVLSNGHGS MLLYGLLHLT GYDLPIEQIK RFRQLHSQTP GHPELGYTPG VETTTGPLGQ
GIANAVGMAL AEQLLAAEFN RDGLPVVDHH TYVFLGDGCL MEGVSHEACS LAGTWGLGKL
VAFWDDNGIS IDGHVEGWFT DDTPGRFEAY GWQVIRAVDG HDPAALDAAI AAARAESAKP
TLICCRTVIG KGSPNKAGTH DSHGAPLGAA EIAASRAALG WTRAPFEIPA DVGAAWDARE
AGALAEAAWN ELFVAYERAH PALAAEFRRR MAGELPAGFA DLADAALAQV VDKGETLASR
KASQNAIAAL VPALPEMVGG SADLAGSNLT LWPQAIPVAA AEQAGAGPSQ AGLQPPRGAD
AVARGRGSYI HYGVREFGMA AVMNGLTLHG GLRTFGGTFL MFSEYARNAL RMAALMKLNP
IYVFTHDSIG LGEDGPTHQP VEQTATLRLI PNMDVWRPAD AVETQVAWTA AIESRDHPTS
LILSRQNLPH NLRSAEQIAA IRRGGYVVSE ASGGAARAVV IATGSELGLA IAAQKQLAAQ
GVPVRVVSMP STHVFDRQDA AWRDSVLPAG LPRVAVEAGV TDGWRKYVGL DGAVVGIDRF
GESAPAGELF ALFGITADAV VAATLGVLGV SARAGSRVAP VAAHGQQIWL DKLSRSLVAS
GELQRWVDEH AVAGVTSNPA IFAQALAGDA AYAPALAELR GVEPDLERRF ERLAIPDVQA
ACDVLRPLYE RSRGEAGYVS FEVSPSLSRD GAGTLAAARR LWAQIARPNA MIKIPATPEC
LEAISAALAD GININVTLMF SRRHAEQVFA AQAEGLRRRH AAGLAVDRVR SVASVFVSRV
DAKVDPLLEA SADAGAKALL GEVAIASARC AYARWLDRFG GSAFAGLRAA GAQPPLCLWA
STGNKNPAYR DVRYVEALIG PQTVNTVPDA TLAAFADHGE TARTLDTDLA GASLIVERAA
ALGIDLDAIG ETLQAEGLLQ FEQAFERLLQ SVA
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