| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0405 |
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| Symbol | |
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| ID | 6161239 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 443860 |
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| End bp | 444852 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641663154 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_001789445 |
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| Protein GI | 171057096 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.169231 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACGCA GAAACCTCAC CCTCGCCTCG ATCGCCTTTG CCGTGCAGGC CCTGCTGGCC
GTCGGCGCCG CGCAGGCGCA GGCCGTCAAG CTCTCGCTCG GCCACGGCGC CGCGCCGGGC
AATCCGCGCC ACGAGGCATC GGTCAAGTTC GCCGAGGTGG TCAAGGCCAA ATCGGCCGGC
CGCATCGAGG TGCAGGTGTC GCCGTCGGCG CAGCTGGGTG ATGACGCGGC GATGGTCACC
GCGCTGCGCA CCGGCGCGAT CGATTTCAGC GCCAACTCGC AGGGCGCGGT GGCCGGCGTG
GTGCCGGAGT ACGCGGCCTT CGGCATGCCG TTCCTGTTCG CCAACCTGCC GCAGGCCTGG
AAGGTGCTCG ACGGCCCGCT CGGCCAGGAG CTGGCACAGA AGTCGGCCGA CAAGGGCCTG
GTGGTGCTGG GCTACTGGGA CAACGGCGTG CGCCACATGT CCAACAGCAA GCGCCCGCTG
CTCAAGCCCG AAGACCTCAA GGGCCTGAAG ATGCGCACCC CGCCCGACGC GGTGACGGTC
GACATCATGC AGAGCCTGGG CGCCGAGGCG CAGCAGATCA AGTTCGCCGA GCTCTACGTG
GCGCTGCAGC AGGGCGTGGT CGACGGCCAG GAGAACCCGC TGATGAACAT CCACGCCAGC
AAGCTCTACG AAGTGCAGAA GTTCATCTCG CTGACCGGCC ACAAGTACGA GATGACGCCG
TTCCTGATGA GCAAGCGCAG CTGGGACAAG CTCTCCGACG CCGACAAGAA GGCGGTGCAG
GAAGCCGCCG CCGAAGCCAC CGCGCTGCAG CGCAAGCTCT CGCAGGAAAG CGACGAGAAG
CTGGTGGCCG ACCTGAAGGC CAAGGGCGTG CGTGTCGACG TGGCCGACAA GGCCGCCTTC
GAGAAGGCCA CCGGCACGGT CGACGACAAG TGGATGGCCA GCCCGATCGG CCCCTTCGTC
AAGAAGGTGA TCACGACCGC CCGCGCCCAG TGA
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| Protein sequence | MQRRNLTLAS IAFAVQALLA VGAAQAQAVK LSLGHGAAPG NPRHEASVKF AEVVKAKSAG
RIEVQVSPSA QLGDDAAMVT ALRTGAIDFS ANSQGAVAGV VPEYAAFGMP FLFANLPQAW
KVLDGPLGQE LAQKSADKGL VVLGYWDNGV RHMSNSKRPL LKPEDLKGLK MRTPPDAVTV
DIMQSLGAEA QQIKFAELYV ALQQGVVDGQ ENPLMNIHAS KLYEVQKFIS LTGHKYEMTP
FLMSKRSWDK LSDADKKAVQ EAAAEATALQ RKLSQESDEK LVADLKAKGV RVDVADKAAF
EKATGTVDDK WMASPIGPFV KKVITTARAQ
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