| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0318 |
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| Symbol | |
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| ID | 6162542 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 344428 |
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| End bp | 345717 |
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| Gene Length | 1290 bp |
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| Protein Length | 429 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641663067 |
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| Product | cytosine deaminase |
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| Protein accession | YP_001789358 |
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| Protein GI | 171057009 |
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| COG category | [F] Nucleotide transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0402] Cytosine deaminase and related metal-dependent hydrolases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGCCA ACCCGACGCT CATCACCAAC GCCAGCCTGC CCGACGGGCG CAGCGCCCAG
GACGTCCTGA TCGACGCCGG CCGCATCGTC GCGGTCGGCC CGCAACTGCC GAGCCCGGAC
GGCGCCGAGC GGATCGACGC CCAGGGCTGG CTGCTCAGCC CGCCCTTCGT CGACGCCCAT
TTCCACATGG ACGCCACGCT CAGCCACGGC CTGCCGCGCG TCAACCGCAG CGGCACGCTG
CTCGAAGGCA TCGCGCTGTG GGGCGAGTTG AAGCCGCTGC TGACGCAGGA GGCGCTGATC
GAGCGCGCGC TGCAGTACTG CGACTGGGCG GTGGCGCGCG GGCTGCTGGC GATCCGCAGC
CACGTCGACA TCTGCGACGA CCGGCTGCTG GCGGTCGAGG CGCTGACCGA GGTGCGCCGG
CGGGTCGCGC CCTACCTCGA CCTGCAGCTG GTGGCGTTCC CGCAGGACGG CGTGCTGCGC
GCGCCGACCG CGCTGGCCAA CCTGAAGCGC GCGCTCGACC TGGGTGTCGA CGTGGTCGGC
GGCATCCCGC ATTTCGAGCG CACGATGGCC GACGGCGCCG AGAGCGTGCG GCTGCTGTGC
GAGCTGGCCG CCGAGCGCGG CCTGCGCGTC GACATGCATT GCGACGAGAG CGACGACCCG
CTGTCGCGCC ACATCGAGAC GCTGGCGTTT CAGACTCAGC GCCTGGGGCT GCAGGGCCGC
GTCACCGGCT CGCACCTGAC CTCGATGCAC TCGATGGACA ACTACTACGT CTCCAAGCTG
ATCCCGCTGA TCGCCGAGGC GCAGGTGCAC GCGGTGGCCA ATCCGCTGAT CAACATCACG
CTGCAGGGCC GCCACGACAC CTACCCCAAG CGCCGCGGCA TGACACGCGT GCCCGAGCTG
ATGGCCGCGG GCGTCAACGT CGGTTTCGGT CACGATTGCG TGATGGACCC GTGGTACTCG
CTCGGTTCGG CCGACATGCT CGAAGTGGCG CAGATGGGCC TGCACGTGGC GCAGATGACC
TCGCAGGCGC AGATGCAGGC GTGTTTCGAC GCCGTCACGG TCAACAGCGC GCGCATCCTC
GGGCTGCAGG ATTACGGCCT GGCGCCCGGC TGCCACGCCG ATCTGGTGCT GCTGCAGGCG
CGTTCGCCGA TCGAGGCGAT CCGCCTGCGC GCCAACCGGC TGTGGGTGAT GCGGCGTGGC
CAGGTGATCG CCCGCAATGC GCCGGTCGAA ACCCGTCTGT CCCTGCCCGG ACGGCCGGCC
CGGACCGATT GCACCTTGAT GCGCGGATGA
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| Protein sequence | MPANPTLITN ASLPDGRSAQ DVLIDAGRIV AVGPQLPSPD GAERIDAQGW LLSPPFVDAH
FHMDATLSHG LPRVNRSGTL LEGIALWGEL KPLLTQEALI ERALQYCDWA VARGLLAIRS
HVDICDDRLL AVEALTEVRR RVAPYLDLQL VAFPQDGVLR APTALANLKR ALDLGVDVVG
GIPHFERTMA DGAESVRLLC ELAAERGLRV DMHCDESDDP LSRHIETLAF QTQRLGLQGR
VTGSHLTSMH SMDNYYVSKL IPLIAEAQVH AVANPLINIT LQGRHDTYPK RRGMTRVPEL
MAAGVNVGFG HDCVMDPWYS LGSADMLEVA QMGLHVAQMT SQAQMQACFD AVTVNSARIL
GLQDYGLAPG CHADLVLLQA RSPIEAIRLR ANRLWVMRRG QVIARNAPVE TRLSLPGRPA
RTDCTLMRG
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