Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0260 |
Symbol | |
ID | 6160579 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 275673 |
End bp | 276581 |
Gene Length | 909 bp |
Protein Length | 302 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641663004 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001789300 |
Protein GI | 171056951 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.026779 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACCGCA TCACCGGCGT ACAGCTTTTC ATCCGCATCG TCGAGACCGC CAGCTTCAGC AAGGCGGCCG CCGAGTTCGG CATCACGCAG CCGACCGCCA CCAAGTCGGT CGCCGCGATG GAGCAGCGAC TGGGCGCGCG GCTGCTGCAC CGCTCGACCC GCGGCGTCAC GCCCACCGAG GTCGGCGCGC TCTATTACGA CAAGTGCAAG CTGATCGCCC GCGAAATCGA CGCCGCCGAT AACCTCGCCA CGCTGCTGCA GAGCCAGGTC GGCGGCACGT TGCGCATCAG CACCTCGGTG GCGTTCGGGC GGCGGGTGGT GGTGCCGCTG GTGCTGCGCT ACATGCGCCT GCACCCGGAG GTCACGGTCG ACCTGGCCTT CGACGACCGC TACGTGAATC TGGTCGAGCA GGGCGTGGAC CTGGCGATCC GCATGGGCCG GCTGGCCGAT TCGGCGCTCG GCGCGCGCTA CCTCGGCACC AACCCCTGGC TGATGGCGGC CGCGCCGGCC TATCTGCGCG AGCACCCGGC GCCGGCCACG CCCGCCGATC TGGCCGCGCA CGCCTGCCTG GTCTACAGCA GCGTGCAGGG CGACGAACGC TGGAGCCTGA CCACGCCGGC CGGCGAGGAG ACATCGGTGC CGGTGCGCGG GCCGCTGCGA TCGAACAACC TGTCGGCCGT GCTGGCCGCG GCGCGCGCCG GCATGGGCCT GGCGGTGCTG CCCTGGTACG TGGCGCGCGA GTCGGTGGCC GACGGTGCGA TCACCCCCGT GCTGGCCGAC CACCTGCTGC CCGCGCAGGC GGTGCATGCG GTGTTCCCGT CGCCGCGGTT GGTGCCGCTG AAGGTGACGA ACTTCATCGC CTTCCTGCAG CAGGCGCTGG CCGGCGAGTG GTGGCGGCAG GCGCTGTAG
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Protein sequence | MDRITGVQLF IRIVETASFS KAAAEFGITQ PTATKSVAAM EQRLGARLLH RSTRGVTPTE VGALYYDKCK LIAREIDAAD NLATLLQSQV GGTLRISTSV AFGRRVVVPL VLRYMRLHPE VTVDLAFDDR YVNLVEQGVD LAIRMGRLAD SALGARYLGT NPWLMAAAPA YLREHPAPAT PADLAAHACL VYSSVQGDER WSLTTPAGEE TSVPVRGPLR SNNLSAVLAA ARAGMGLAVL PWYVARESVA DGAITPVLAD HLLPAQAVHA VFPSPRLVPL KVTNFIAFLQ QALAGEWWRQ AL
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