| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0236 |
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| Symbol | |
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| ID | 6160555 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 251255 |
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| End bp | 254062 |
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| Gene Length | 2808 bp |
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| Protein Length | 935 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641662980 |
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| Product | histidine kinase |
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| Protein accession | YP_001789276 |
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| Protein GI | 171056927 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG2205] Osmosensitive K+ channel histidine kinase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.00442274 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTCTCGC CGGCCCTGGT GCTGGGTGCT TCGTTCGCCT ACCTGACGCT GCTGTTCGCG
GTCGCCTGGT GGGGCGACCG GCGCGCCGCG CAGGGCCGAT CGGTGATCGG CAACGCCTGG
GTCTACGCGC TGTCGATGGC GGTCTACTGC ACCGCCTGGA CCTATTTCGG CAGCGTCGGC
CGGGCCGCCT CGGGCGGGGT CTGGTTCCTG CCGATCTACC TCGGCCCGAT GCTGGCGATG
GTGCTGGCCT GGTCGGTGGT GCGCAAGATG ATCCGCATCG CGCGCACCTA CCGCCTGACC
TCGATCGCCG ACTTCGTCGC CAGCCGCTAC GGCAAGAGCC CGCTGCTGGC CGGCCTGGTG
ACGCTGATCA CGGTGGTCGG CATCGTGCCC TACATCGCGC TGCAGCTCAA AGCCGTCGCC
GGCGGCTACG CGCTGATGAC CACGCCGCTG GGCGAGCCGC TGCTGGCCGC ACCGGCCTTG
TGGCGCGACA GCACGCTCTA CGTCGCGCTG GCGCTGGCCG GCTTCACGAT GGTGTTCGGC
ACCCGCCACC TCGACAGCAC CGAGCGCCAC GAGGGCATGG TGCTGGCGAT CGCCTTCGAG
TCGGTGGTCA AGCTGGTGGC GTTCCTGGCG GTGGGCGTGT TCGTCACCTG GGGCCTGTTC
GGCGGGCCGG CCGACCTGTT CGAGCGTGCC GCCGCGGTGC CCGAACTGCG CCAGCTGCTG
CGCCTCGAAC AGGGCCGCAG CTTCCCGTAT GCGCAGTGGT TCGCGCTGAC GATGCTGTCG
ATGCTGTCGG TGATCTTCCT GCCGCGCCAG TTCCAGGTGA TGGTGGTCGA GAACGTCGAC
GAGAGCCACC TCAAGCGCGC CGCCTGGGCC TTTCCGGCCT ACCTGCTGCT GATCAACCTG
TTCGTGCTGC CGATCGCGCT CGGCGGCCTG CTGTATTTCT CGGCCGGCGG CATGAACGCC
GACAGCTTCG TGCTCAGCCT GCCGCTGGCC GGCGGCCAGT CGGCGCTGGC GCTGATCGCC
TTCGTCGGCG GGCTGTCGGC GGCCACCGGC ATGGTGATCG TCGAGGCCAT CGCGGTCTCG
ACGATGGTCT GCAACGACCT TGTCATGCCG CTGCTGCTGC GCTGGCCGCG CTGGTCGCGC
GCCGGTGACC TGACCGGGCT GCTGCTGGCG ATCCGGCGCG CGGCGATCGT CGCCATCCTG
CTGCTCGGCT ACCTGTACTA CCACCTGGCC GGCGAGGCCT ACGCGCTGGT CAGCATCGGC
CTGATCAGCT TTGCCGCGGT GGCCCAGTTC GCGCCGGCGA TGCTCGGCGG CATGTACTGG
CAGGGCGGCA CGCGCAATGG CGCGCTGGCC GGGCTCGCGG CCGGCTTTGC GGTCTGGGCC
TACACGCTGA TGCTGCCGTC GCTGGCCAAG TCGGGCTGGT TGCCCGACAC CTTCCTGCGC
GACGGCATCG GCGGCATCGC GCTGCTGCGG CCCGAGCAGC TGTTCGGTCT GGGCGGGCTC
GACAACCTGA CGCACTCGCT GTTCTGGAGC CTGCTGGCCA ACGTCGGCGC CTACGTGGTG
ATGTCGCTGG CGCACCGGCC GACCGCGCGC GAGCTGAGCC AGGCGCTGCT GTTCGTCGAG
GTCTTCGGCG CCGCCGGCCA GGGCAGTGCC GCGACGGCAC CGGTGTTCTG GCGCGGCCGG
GCGCGGGTCG AGGACCTGCG CGCGCTGGCG GCGCGTTTCC TCGGCGAGGC CAAGGCGCGC
GAGCTGTTCG AGCGCCATGC GCGCGAGCTG GGCCTGGCGG ACGTCTCGCA GCTGCAGCCC
GACGGCCGGC TGGTGCACCG GGTCGAGACC CAGCTGGCCG GCGCGATCGG CAGCGCGTCG
GCGCGCGTGA TGGTGGCGTC CACCGTCGAG GAGGACACGC TCGGCCTCGA CGACGTCATG
CGCATCGTCG ACGAGGCCTC GCAGCTGCGC GCCTACTCGC GCCAGCTCGA GGAGCAGCAG
GCCTCGCTGC GCCGCGCCAC CGACGAGCTG CGCGCGGCCA ACGAGAAGCT GCAGGGGCTC
GACCGCCTGA AGGACGATTT CATGTCGTCG GTGACGCACG AGCTGCGCAC GCCGCTGACC
TCGATCCGCG CGCTCGCCGA GCTGATGCGC GACGAGGCCG ACATGCCCGA GGCGCAACGC
CAGCAGTTCA TGACCATCAT CGTCGGCGAG ACCGAGCGCC TGTCGCGGCT GGTCAACCAG
GTGCTCGACA TGGCCAAGAT CGAGTCCGGC CACGCCACCT GGATCGACGA CGACGTCGAC
CTCGTGGCGC TGGCCGGACA CGCCGCGCAG ACCCTGGCCG AGCTGATGCG CGAGCGCGGC
ATCACGCTGC AGCTCGACCT GCCGGCCGAG CCGCTGCCGA CGTTGCGCGC CGACCCCGAC
CGGCTGCTGC AGGTGCTGCT CAACCTGCTG TCCAACGCCG CCAAGTTCAC GCCGGCCGGC
GCTGGCCGCA TCGTGCTGAC GGTGCGTGGT GATGCGCAGG GCGCGACCGT CACGGTGGCC
GACAACGGCC CCGGCGTGCC GGCCCACGAG CAGGCGCTGG TGTTCGAGAA ATTTCGCCAG
GGTGGCGACG GCCTGAACCG GCCGCAGGGC ACCGGACTGG GCCTGCCGAT CTGCCGCCAG
ATCGTCGAGC ATTACGGCGG GCGGATCTGG CTGCGATCCG ATCCGGGTCA AGGTGCGACA
TTCGGCTACA CGCTACCGTG GACAGCCGCG GCGGCGGGAG GCATGGTGCC CACCATGAAC
ACGATGCAGG AGACAGCCCA TGAGCCACAA GATACTGATC GCCGATGA
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| Protein sequence | MLSPALVLGA SFAYLTLLFA VAWWGDRRAA QGRSVIGNAW VYALSMAVYC TAWTYFGSVG
RAASGGVWFL PIYLGPMLAM VLAWSVVRKM IRIARTYRLT SIADFVASRY GKSPLLAGLV
TLITVVGIVP YIALQLKAVA GGYALMTTPL GEPLLAAPAL WRDSTLYVAL ALAGFTMVFG
TRHLDSTERH EGMVLAIAFE SVVKLVAFLA VGVFVTWGLF GGPADLFERA AAVPELRQLL
RLEQGRSFPY AQWFALTMLS MLSVIFLPRQ FQVMVVENVD ESHLKRAAWA FPAYLLLINL
FVLPIALGGL LYFSAGGMNA DSFVLSLPLA GGQSALALIA FVGGLSAATG MVIVEAIAVS
TMVCNDLVMP LLLRWPRWSR AGDLTGLLLA IRRAAIVAIL LLGYLYYHLA GEAYALVSIG
LISFAAVAQF APAMLGGMYW QGGTRNGALA GLAAGFAVWA YTLMLPSLAK SGWLPDTFLR
DGIGGIALLR PEQLFGLGGL DNLTHSLFWS LLANVGAYVV MSLAHRPTAR ELSQALLFVE
VFGAAGQGSA ATAPVFWRGR ARVEDLRALA ARFLGEAKAR ELFERHAREL GLADVSQLQP
DGRLVHRVET QLAGAIGSAS ARVMVASTVE EDTLGLDDVM RIVDEASQLR AYSRQLEEQQ
ASLRRATDEL RAANEKLQGL DRLKDDFMSS VTHELRTPLT SIRALAELMR DEADMPEAQR
QQFMTIIVGE TERLSRLVNQ VLDMAKIESG HATWIDDDVD LVALAGHAAQ TLAELMRERG
ITLQLDLPAE PLPTLRADPD RLLQVLLNLL SNAAKFTPAG AGRIVLTVRG DAQGATVTVA
DNGPGVPAHE QALVFEKFRQ GGDGLNRPQG TGLGLPICRQ IVEHYGGRIW LRSDPGQGAT
FGYTLPWTAA AAGGMVPTMN TMQETAHEPQ DTDRR
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