| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0224 |
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| Symbol | |
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| ID | 6161944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 236825 |
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| End bp | 240226 |
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| Gene Length | 3402 bp |
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| Protein Length | 1133 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641662968 |
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| Product | hypothetical protein |
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| Protein accession | YP_001789264 |
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| Protein GI | 171056915 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4913] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.00190066 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGAATG AGGCGCTGGC GTTGGACTTC GGCGCCGACG AGGCTGACGG CGCACTGGCG
GGCTTTCGCC TGCAGCGCCT GGAGGTCTTC AACTGGGGCA CCTTCGATGC CCGCGTCTGG
ACGCTGCGTG CCGACGGCCG CAACGTGCTG CTCACCGGCG ACATCGGCTC GGGCAAGTCG
ACGCTGGTCG ACGCCGTCAC CACGCTGCTG GTGCCGGCGC ACCGCGTCGC CTACAACAAG
GCGGCCGGCG CCGAGGCGCG CGAACGCACG CTGCGCAGCT ACGTGCTCGG CCACTACAAG
GCCGCGCGCA GCGAGCTCGG CGGCTCGGGC CGGCCGGTGG CGCTGCGTGG GCCCGACAGC
TACTCGGTGA TCCTGGGCGT GTTCCACAAC GCCGGTTACG ACCAGACCGT GACGCTGGCG
CAGGTCTTCT GGCTCAAGGA CCCGCAGGGC CAGCCGCTGC GCCTGTACGC GGTGGCGGAA
AAGGCCTTGA GCATCGCCGC CGACTTCGCC GATTTCGGCA CCGACATCGT CAAGCTGCGC
AAGCGCCTGC GTGCCGCCAA GGTGGTGGTG GAGGACAGCT TTCCGCCCTA CGGCGCGCTG
TTCCGGCGCC ACTTCGGCAT CCACAACGAG CAGGCGCTGG AGCTGTTCCA CCAGACGGTG
TCGATGAAGT CGGTCGGCAA CCTGACCGAC TTCGTGCGCA GCCACATGCT CGAACCCTTC
GACGTGGCGC CGCGGCTGGT TGCGCTGATC GCCCACTTCG ACGACCTCAA CCGCGCCCAC
GAGGCGGTGC TCAAGGCGCA GCGCCAGGTG GCGCTGCTGC AGCCGCTGGT GGCCGACTGC
GAGCGCCATG GCGAACTCGC CGCCGCGGTC GAGGCCCAGC GCGCCGCACG CGAGGCGCTG
CAGGCCTGGT TTGCCGGGCT CAAGGCCGAG CTGCTGGACC AACGCCTGCA GCACCTGGGC
GACGATCTGG CGCGCCACCT CAGCCAGATC GAGCGCCTCA CCGCCCTGCA GCGCGAGCAG
CTCTCGCAGG AACGCGAGCT GCGGCGCGCG ATCGCCGACA GTGGCGGCGA CCGCATCGAG
CGCCTGGCGC TGGACATCGC GCGCAAGGAA ACCGAGAAAC GGCGCCGCAC CGACAAGGCC
GGCCGCTACG ACGCGCTGCG CCAGACGCTC GGCCTGCTGG CGATGCACAG CGCCGAGGAT
TTCCTGAACC AGCGCGCCTT GTGTGCGCCG CTGCGCGAGG CCGCTGCCGA GCACGAGGCG
AGGGCGCAGA ACGCGCTCAA CGAACTGGGC GTGGCCTTTG CCCAGGGCCG CAAGGAACAC
GACGAGATGC TGGCCGAGAT CGCCAGCCTG AAGGCGCGCC GCAGCAACAT CGACGCGCAG
CAGGTGGTGC TGCGTGCTGC GTTGTGCGAG GCCTTGAAGC TGCGCGAGGC CGACCTGCCG
TATGCCGGCG AACTGATCCA GGTGCGCGAC GACGAGCGCG ACTGGGAGGG CGCCGCCGAA
CGGCTGCTGC GCAGCTTCGG CCTGTCGCTG CTGGTGCCCG ACGAACACTA CGCCGCGGTC
AGCGACTGGG TCGACCGCAC GCAGCTGAAG GGCCGGCTGG TCTACTTCCG CATCCGTCCC
AAGGCCAGGG GTTCGAGCCA GGACGGCCGC GGCGATCTGC CCGCGCTGCA GCCCGATTCG
CTGGCGCGCA AGCTGGCGAT CAAGCCCGAC ACGCCGTTCT ACGGCTGGCT CGAGCGCGAA
CTGGCGCACC GCTTCGACCT GGCCTGCTGC ACCGGGCAGG AGCAGTTCCG CCGCGAGGCG
CGCGCCATCA CCCGCGCCGG CCAGATCAAG TCACCGGGCG AACGCCACGA GAAGGACGAC
CGCCACCGCA TCGACGACCG CAGCCGCTAC GTGCTCGGCT GGAGCAACCA GGCCAAGATC
GCCGCGCTCG AATCCAGGGC CCGGGTGCTG CAGGCGCGGC TGATCGAGAC CGGCCAGCGC
CTGGCCGCGC TGCAGAACGA ACAGGCGGCC CTGCGCGAGC GACTGCAGGC ACTCGACAAG
CTGGAGGAAT ACCGCGATTT CACCGAGCTC GACTGGCGCA GCAGCGTCAC CGAACTGGCC
GCCTTGCAGG ATGAGAAACA GCGGCTGGAG GCCGCCTCCG ACGTGCTGAA GACGCTGGCC
GTGCAGCTGG CCACGCTGGA GTCGGTCCGC GACGACACCG GTCGCAAGCT GAAGGATCGT
GAAGCCGAAC AGACCCGCTG CGCGCTGAAA CACGAGCAGG CCCGGGCGCT GCGCGAGCAG
GCGCAGCAGA AGCTGGACGC CGCCGACTTC GCCGCTCGGG CCGCGCACTT CGGCCTGATC
GAGGGCTGGC GTGCGCTGGC CCTGGGCGAT CAGGCCCTGA GCGTCGAAAA CTGCGACGGC
CGCGAGCAGG AGATGCGGCG CTGGCTGCAG GCGCGCATCG ACGCCGACGA CAAGCGGCTC
GCCCACCTGG GCGAGAAGAT CGTGCGCGCG ATGGCCCAAT ACAAGGAAGC CTTCAAGCTC
GACACCCAGG AGGTCGATGC CAGCGTGGCC GCCGGCGCCG AGTACCGCGC GATGCTGGCG
CAGCTCAAGG CCGACGACCT GCCGCGGTTC GTCGCCCGCT TCAAGGAGCT GCTCAATGAA
AACACCATCC GCGAGGTGGC GCATTTCCAG TCGCAACTGC ACCGCGAGCG CGAGACCATC
AAGGAGCGCA TCGCGCGCAT CAACGAGTCG CTGACGCAGA TCGACTACAA CCCCGGCCGC
TTCATCGCGC TCGAAGCCCA GACCGCCACC GACGCCGACG TGCGCGACTT CCAGACCGAG
TTGCGCGCCT GCACCGAAGG CACGCTGACC GGCTCGGACG ATGCGCAGTA TTCCGAGGCC
AAGTTCCTGC AGGTCAGGCA GATCATCGAG CGTTTCCGCG GCCGTGAAGG TTCGGCCGAA
GCCGACCGGC GCTGGGCCGC CAAGGTGACC GACGTGCGGC AGTGGTTCGT GTTTGCCGCC
AGCGAACGCT GGCGCGAGGA CGGCAGCGAG TTCGAGCACT TCTCCGATTC GGGCGGCAAG
TCCGGCGGGC AGAAGGAGAA GCTCGCCTAC ACCATCCTGG CCGCCAGCCT GGCCTACCAG
TTCGGGCTGG AATGGGGCGC GCTGCGCTCG CGGACGTTCC GCTTCGTCGT CATCGACGAG
GCCTTCGGCC GTGGCTCGGA CGAGTCGGCG CAATACGGCC TGCGCCTGTT CCAGCAGCTC
AACCTGCAGC TGCTGATCGT CACGCCGCTG CAGAAGATCC ACATCATCGA ACCCTTCGTG
GCCAGCGTGG GCTTCGTGCA CAACGAGGAC GGCAGCGCCT CGAAGCTGCG CAACCTCGGC
ATCGAGGACT ACCGCGCACA GCGCGACGGG TCGATGCCAT GA
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| Protein sequence | MKNEALALDF GADEADGALA GFRLQRLEVF NWGTFDARVW TLRADGRNVL LTGDIGSGKS
TLVDAVTTLL VPAHRVAYNK AAGAEARERT LRSYVLGHYK AARSELGGSG RPVALRGPDS
YSVILGVFHN AGYDQTVTLA QVFWLKDPQG QPLRLYAVAE KALSIAADFA DFGTDIVKLR
KRLRAAKVVV EDSFPPYGAL FRRHFGIHNE QALELFHQTV SMKSVGNLTD FVRSHMLEPF
DVAPRLVALI AHFDDLNRAH EAVLKAQRQV ALLQPLVADC ERHGELAAAV EAQRAAREAL
QAWFAGLKAE LLDQRLQHLG DDLARHLSQI ERLTALQREQ LSQERELRRA IADSGGDRIE
RLALDIARKE TEKRRRTDKA GRYDALRQTL GLLAMHSAED FLNQRALCAP LREAAAEHEA
RAQNALNELG VAFAQGRKEH DEMLAEIASL KARRSNIDAQ QVVLRAALCE ALKLREADLP
YAGELIQVRD DERDWEGAAE RLLRSFGLSL LVPDEHYAAV SDWVDRTQLK GRLVYFRIRP
KARGSSQDGR GDLPALQPDS LARKLAIKPD TPFYGWLERE LAHRFDLACC TGQEQFRREA
RAITRAGQIK SPGERHEKDD RHRIDDRSRY VLGWSNQAKI AALESRARVL QARLIETGQR
LAALQNEQAA LRERLQALDK LEEYRDFTEL DWRSSVTELA ALQDEKQRLE AASDVLKTLA
VQLATLESVR DDTGRKLKDR EAEQTRCALK HEQARALREQ AQQKLDAADF AARAAHFGLI
EGWRALALGD QALSVENCDG REQEMRRWLQ ARIDADDKRL AHLGEKIVRA MAQYKEAFKL
DTQEVDASVA AGAEYRAMLA QLKADDLPRF VARFKELLNE NTIREVAHFQ SQLHRERETI
KERIARINES LTQIDYNPGR FIALEAQTAT DADVRDFQTE LRACTEGTLT GSDDAQYSEA
KFLQVRQIIE RFRGREGSAE ADRRWAAKVT DVRQWFVFAA SERWREDGSE FEHFSDSGGK
SGGQKEKLAY TILAASLAYQ FGLEWGALRS RTFRFVVIDE AFGRGSDESA QYGLRLFQQL
NLQLLIVTPL QKIHIIEPFV ASVGFVHNED GSASKLRNLG IEDYRAQRDG SMP
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