Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0185 |
Symbol | |
ID | 6161425 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 194353 |
End bp | 195156 |
Gene Length | 804 bp |
Protein Length | 267 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641662929 |
Product | short chain dehydrogenase |
Protein accession | YP_001789225 |
Protein GI | 171056876 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGAGA CGCAATTGCC CATGCCGACC GATGCGCCCC TGGTTGTCAT CACCGGTGCC TCCAGCGGCA TCGGCCAGGC GCTTGCCAGC GCCTATGCGC AGCGTGGCTG GCGCCTGGCC CTGGTGGCAC GCCGCGCCGA GGTGATGCAG GCCTGGGTTC GTGAGCAGCA GCTCGATCCT GCGCGTGTGG CGGTCTATGG TGCCGACGTC CAGGACATCG ACGCCATCGT CGACGCTGGC CAGCGTTGCC TGCTCGAATG CGGGCTGCCC GACGTCGTGA TCGCCAACGC CGGCATCAGC GTCGGCATCG ACACGGCCGA ACGTTCCGAT CTGGATGTGC TGCGCGAGAT CTACGCCACC AACAACGTTG GCATGGCCGC CACCTTTCAC CCGTTCATCG CTGCGATGCG GCTCGCGCGG CGTGGCACGC TGGTCGGGGT GGCGAGTGTC GGCGCCATCC GTGGCATGCC GGGTCACGGC GGCTATTGCG CCAGCAAGGC GGCGGTGGCG AGCTATTGCG AAAGCCTGCG CCTGGAGTTG CGCTCCGACG GCGTGCGTGT CGTGACCTTG CTGCCCGGCT TTGTCGACAC GCCGCTCACG CGCCAGAACC CCTATCCGAT GCCGTTCATG ATGTCTGCCC CGGCATTCGC CGCAAGGGCG ATCCGTGCGA TCGACGCGGC CGATCGCTGG CGCGTCATTC CGTGGCAGAT GGGCTGGGTC GCCAAGCTCC TGCGGTGCCT GCCCGATGCG ATCTACGACC GGGCGATGGC CGGCCGTGCG CGCAAGAAGC GGCGAAGTGA ATGA
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Protein sequence | MPETQLPMPT DAPLVVITGA SSGIGQALAS AYAQRGWRLA LVARRAEVMQ AWVREQQLDP ARVAVYGADV QDIDAIVDAG QRCLLECGLP DVVIANAGIS VGIDTAERSD LDVLREIYAT NNVGMAATFH PFIAAMRLAR RGTLVGVASV GAIRGMPGHG GYCASKAAVA SYCESLRLEL RSDGVRVVTL LPGFVDTPLT RQNPYPMPFM MSAPAFAARA IRAIDAADRW RVIPWQMGWV AKLLRCLPDA IYDRAMAGRA RKKRRSE
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