Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0141 |
Symbol | |
ID | 6162942 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 144947 |
End bp | 146185 |
Gene Length | 1239 bp |
Protein Length | 412 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641662885 |
Product | outer membrane efflux protein |
Protein accession | YP_001789181 |
Protein GI | 171056832 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTCACTTC CCACAAGAAT CATCGCCTGC GGCGTGCTCG CAGGCGTGCT GCTCGGCGCC CAACTCGCCG CGGCACAAAC ACCGGCGCCA CAGCCGGCCA CCACACTGGC CGATGCAGTG CGCGCTGCAT GGCGCCGCAG CGTCCATGCC ACCGAGGTCG CCGGCCAGCA ACGCCGCGCC CAGGCCGAGC GGACCGCCGC ATCGGCACCC TGGGCCGAAC CCCCTTCGGT GGAGCTGGAT TACCGGACCG ACCGGCTTCA AACCGACGCC GGCTCGCGTG AAACCGAGCT CGGCGTGGCC ATTCCGCTCT GGTTGCCCGG GCAACGCGCG GCTCGCCGGG CATCGGCCGA GGCCGAAGAA TCGGCTGCCA ACGCGGCGCA AGCGGCAGGC GAACTGCAAG CCGCGGCCCT GGTGCGCGAG GCGGCCTGGG GCCTCACCCG CCAGCAGGCC GAGGTCGATC TCGCGGCGCA GCAGGTGCAG GTGCTGGACG CCCTGGCCAG CGATGTCGAG CGGCGGGTCG CCGCGGGCGA TCTGGCCCGG GTCGACGCAT TGGCCGCCCG GGCCGAACTG CTGGCCGCCA CCGCCGGCCT GAGTCAGGCC CGACAGGCGC TGCACGCCGC CGTGATCCAG TGGTCTGCGC TGACCGGCTA CGCCAGCGCG CCGGAAGACC TGCAAGCCGA GCAAGCACCC GCGGACGCGA CGCTCGGCGA CGCGCACCCG GCCCTGCGCG CCGCCCGCCT CGGCATCGAG CTGGGCCGCA AGCGTCTGGA TGCCGTGCAG GCCTCGTCGC GCAGCGCGCC GGAGTTCGTC GCCCGACTGC GTCAGGACCG GTCCGCACGC GGTGAACCCG CCGCGAACAG CATCGGCGTC GGCCTGCGCA TCCCCTTGGG CACCGATGAC CGCAATGCCC CGCTGCAGGC CGCCGCGCTC AACGAACTGG CGGCAGCACA GGCCACCGAG CAGCAATTGA AGGTGCAGCT CCAGGCCGAG GTCGACCAGG CCCGCGCCGC GGCCCTGGCC GCCGAGCAGC AATTGGCCCA CGAATCGGAG CGCTCGAAGC TGATGCGCGA GCGGGCCTCG CTCATCGAGC GCTCGTTCCG GGCCGGCGAA ACGCCGCTGC CTGAATTGCT GCGGGCCTTG TCGGACGCCG CCCGGGCCGA AGCGGACCTG CATCGCCAAT CTGCCGCGCT GGGCCTGGCC CGCGCCCGCC TCCAACAAGC TCTCGGAATC CTGCCATGA
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Protein sequence | MSLPTRIIAC GVLAGVLLGA QLAAAQTPAP QPATTLADAV RAAWRRSVHA TEVAGQQRRA QAERTAASAP WAEPPSVELD YRTDRLQTDA GSRETELGVA IPLWLPGQRA ARRASAEAEE SAANAAQAAG ELQAAALVRE AAWGLTRQQA EVDLAAQQVQ VLDALASDVE RRVAAGDLAR VDALAARAEL LAATAGLSQA RQALHAAVIQ WSALTGYASA PEDLQAEQAP ADATLGDAHP ALRAARLGIE LGRKRLDAVQ ASSRSAPEFV ARLRQDRSAR GEPAANSIGV GLRIPLGTDD RNAPLQAAAL NELAAAQATE QQLKVQLQAE VDQARAAALA AEQQLAHESE RSKLMRERAS LIERSFRAGE TPLPELLRAL SDAARAEADL HRQSAALGLA RARLQQALGI LP
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