| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0121 |
|---|
| Symbol | |
|---|
| ID | 6162779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 124582 |
|---|
| End bp | 125424 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641662865 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001789161 |
|---|
| Protein GI | 171056812 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3109] Activator of osmoprotectant transporter ProP |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0127527 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTCGA ACGAATTTCC CGCCGCCGCC CCCGACCTGA CGCCGGCGGT CAGCCCCGCT
GAAGCCCCGA TGGCCGAGAC CGTCACCGCT GAAACCGTCA CGGCCGGGGC TCCCGAGGCG
GTCGTCCCCG AGGCGCCCCA AGCCGAAGGT GCCACCGATG CCGCCGCAGC CGACGCGCCG
GTGGTGGCCA GCGCGCCCAA GGTCGTGATC CCCGACATGA GCCCGGCGGC CTGCGCGCAG
CAGCTCAAGA GCCGTTTTCC GGCCCTGTTC AGCGGTGCGC CGCGGCCCGT CAAGCTGCGC
ATCCAGGCCG ACATCCAGGC GCGTGTGCCG GGTGTCTTCA CCAAGCAGGT GCTGTCGGCC
TTCCTGCGCC GCCACACCGG CACCACCGCC TACCTGATCG CGCTGACCAA GGCGAGCCAG
CGGTTCGACC TCGACGGCCA GCCCGCCGGC GAGGTCAGCG ACGAACACCG CCAGGCCGCC
AACGAGGAAC TGCAGCGTCG CCGCGGCGTG CACGACGAAC GCCGCGCCGC CGAAGACGAG
CGCCGCGCGC TCGAACAGCA GCAGTGGCAC AACCGCGCCC AGCTGCTGCG CGACTTCCAG
GTCACCACGC TGACCCGCGC CAACTTCTGC GCCCTCAAGG GCGTGGCCGA GGATCAGCTC
GACGGCCTGC TCGACATCGC CCGCCGCGAA GCCGCGGAGT GGGCCGCCAA CCGCCCGCCG
GTGCAGGAAC GCGAACAGCG CGAGCCCCGC GACGCACGCG GCCCCCGGCG CGACGACCAC
CGCGGCAACA ACCCGCGCCC GGCCGGCAAC CGCCCCGCCG GCGGCCGCCC GCCGCGGCGC
TGA
|
|---|
| Protein sequence | MSSNEFPAAA PDLTPAVSPA EAPMAETVTA ETVTAGAPEA VVPEAPQAEG ATDAAAADAP
VVASAPKVVI PDMSPAACAQ QLKSRFPALF SGAPRPVKLR IQADIQARVP GVFTKQVLSA
FLRRHTGTTA YLIALTKASQ RFDLDGQPAG EVSDEHRQAA NEELQRRRGV HDERRAAEDE
RRALEQQQWH NRAQLLRDFQ VTTLTRANFC ALKGVAEDQL DGLLDIARRE AAEWAANRPP
VQEREQREPR DARGPRRDDH RGNNPRPAGN RPAGGRPPRR
|
|---|
| |