Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0120 |
Symbol | |
ID | 6162778 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 123915 |
End bp | 124490 |
Gene Length | 576 bp |
Protein Length | 191 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 641662864 |
Product | intradiol ring-cleavage dioxygenase |
Protein accession | YP_001789160 |
Protein GI | 171056811 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.0339331 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGGCGC TGTGGCTGGG CCCGCGGGCC CAGAACACCG CCGGCCTGCG GCCGACGCCG AGCCAGACCG AAGGCCCGTT CTACCCGTTG CAACTGCCCG CCGACAGCGA TTTCGACCTG CTGCGCAACG GCGCGGCGCG CGCCAGCCGC GGCGAGCCGG CCTGGGTCGA GGGCACGGTG AGCGATCTGC GCGGCCGGCT GCTCGAAGGC GCGGTGGTCG AGATCTGGCA ATGCGATGCC GACGGCCATT ACCACCACCC CGGCGACGGC GGCCGCGCCG ATCCGGCCTT CCAGGGCTTC GGCCGCGTCA CGGTCGGCGC CGACGGCCGC TACCGTTTCC GCACCCTGCG CCCGGCGCCC TACAGCGGCC GCACGCCGCA CATCCACTTC AAGGTGCGAC ACCAAGGCCA CGAGCTGCTG ACCACCCAGC TCTACGTGCA GGGCGACCCC GGCAACGAGC GCGACGGCCT CTGGCGGCGC CTGCGCGACC CGCGCGACCG GGCTGCGCTG ACGGTGCCGT TCGAGCCCGG CGTCGACGGC CTGCGGGCGC GTTTCCCGAT CGTCGTCGAG GCCTGA
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Protein sequence | MPALWLGPRA QNTAGLRPTP SQTEGPFYPL QLPADSDFDL LRNGAARASR GEPAWVEGTV SDLRGRLLEG AVVEIWQCDA DGHYHHPGDG GRADPAFQGF GRVTVGADGR YRFRTLRPAP YSGRTPHIHF KVRHQGHELL TTQLYVQGDP GNERDGLWRR LRDPRDRAAL TVPFEPGVDG LRARFPIVVE A
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