Gene Lcho_0115 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0115 
Symbol 
ID6161884 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp118764 
End bp119354 
Gene Length591 bp 
Protein Length196 aa 
Translation table11 
GC content68% 
IMG OID641662859 
Product5-formyltetrahydrofolate cyclo-ligase 
Protein accessionYP_001789155 
Protein GI171056806 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0212] 5-formyltetrahydrofolate cyclo-ligase 
TIGRFAM ID[TIGR02727] 5,10-methenyltetrahydrofolate synthetase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.0320458 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCTCCT TCAAGCTGCC CGAACCGCCC CGAGACAAGG CCACGCTGCG CAAGCAGCTG 
CAGGCCGAAC GCATGGGCAT GAGTGATCGC CACCAGCGCT CGGTGCACCT GCAGGAGGTG 
CTGCAGGTCT GGCTGCTGTC GCGCCGCGAG AAGACCATCG GCGCGTTCTG GTCGATCAAG 
GGCGAGTTCG ATGCCCTGCC CGCGCTCTAC CGCTGGAGCG AATCCGACCC CGCGCGCCGC 
ATCGGTCTGC CGGTGATCGA CAAGAAGACC AAGCAGCTGC GCTTTCACGT CTGGTACCCG 
GGCTGCCCGA TGGAGGAGGA CGCCTTCGGC ATCCTCAAGC CCAAGGACAC CGAGGAGTTC 
CACCCCGAGC TGCTGCTGGT GCCGTGCGTG GGCTTCGGCC CCAAGGGCAT CCGGCTCGGT 
TACGGCGGCG GCTTCTACGA CCGCACGCTG GCGCAGCTCA AGCCGATGCC CTACACCGCG 
GGCGTGGGCT ACTCGCACGG CTACATCCCG TGGCTGGAGG CCGAGTCGCA CGACGTCCCG 
CTCGACGCCA TGCTGACCGA GGACGGCGCG GTCTGGGATC GCGACGCCTG A
 
Protein sequence
MPSFKLPEPP RDKATLRKQL QAERMGMSDR HQRSVHLQEV LQVWLLSRRE KTIGAFWSIK 
GEFDALPALY RWSESDPARR IGLPVIDKKT KQLRFHVWYP GCPMEEDAFG ILKPKDTEEF 
HPELLLVPCV GFGPKGIRLG YGGGFYDRTL AQLKPMPYTA GVGYSHGYIP WLEAESHDVP 
LDAMLTEDGA VWDRDA