Gene Lcho_0091 details

Gene Information

• Locus tag: Lcho_0091
• ID: 6161017
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 95507
• End bp: 96154
• Gene Length: 648 bp
• Protein Length: 215 aa
• Translation table: 11
• GC content: 75%
• IMG OID: 641662835
• Product: DTW domain-containing protein
• Protein accession: YP_001789131
• Protein GI: 171056782
• COG category: [S] Function unknown
• COG ID: [COG3148] Uncharacterized conserved protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 0.00346625
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGCACCAGA AATCCGTCGC CCAGCCCCGC CGCCCGACCT GCTCCGCCTG CCACCTCCCG 
CAACGCACCT GCCTGTGCGC CTGGCTGCGT CCCACGCCCA ACGCGGTCGA GGTGCTGATC 
CTGCAGCACC CGCTGGAAGC GCACCAGGCC AAGGGCAGCG CCCGCCTGCT GGCGCTGAGC 
CTGCAGCGCT GCCGGAGGGT GGTGGCCGAG ACACTCGATG CCGCCGCGCT GGCCGACTGG 
CTGGGGCCGG ACGACGCCGC GCCCGGCGAC ACCGTGCTGC TCTACCCTGC CACCGCATCG 
GCGCCCGGCC CGCTGGCCGA CCCGGCCGTG ATGCCGCGCC GGCTGGTCGT GCTCGACGCG 
ACCTGGCGCA AGAGCCTGCG CCTGCTGCAT CTCAATCCGC GGCTGCAGGC GCTGCCGCGC 
TGGCCGCTGG TGGATCCGCC AGCGGCGCGT TACGGCGCGC TGCGCAAGGC GGCGTTGCCC 
GAGCAGCTGT CGACGCTGGA GGCCACCTGC CTGGCGCTGG CGCAGATCGA GGCCGACGCG 
CCGCGATATG CGCCGTTGCT CGATGCCTTC GGCGCCTGGG TGGCCGACAC CTCGACCGCC 
TTCCGGCCGA CGCCCGCCGC GATCACGCCG GGCGAAACGC CGCCCTGA 

 

Protein sequence

MHQKSVAQPR RPTCSACHLP QRTCLCAWLR PTPNAVEVLI LQHPLEAHQA KGSARLLALS 
LQRCRRVVAE TLDAAALADW LGPDDAAPGD TVLLYPATAS APGPLADPAV MPRRLVVLDA 
TWRKSLRLLH LNPRLQALPR WPLVDPPAAR YGALRKAALP EQLSTLEATC LALAQIEADA 
PRYAPLLDAF GAWVADTSTA FRPTPAAITP GETPP