Gene Lcho_0054 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0054 
Symbol 
ID6160001 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp58623 
End bp59270 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content70% 
IMG OID641662798 
Producthistidine kinase 
Protein accessionYP_001789094 
Protein GI171056745 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.666913 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCGGCG AGCTCAACCA GCGCCAGCTC GAGTACCTGC ACGACATCCA CGCCTCGGGC 
CATCACCTGC TGCAGCTGAT CAACGACATC CTCGACCTGA CCAAGATCGA GGCCGGCCGC 
ATGGAGCTCG AGCTGGCGCC GTGCGACCTG GCGCAGCTGC TCGAATCCGC CATCGGCCTG 
ATCCGCGAAC GCGCCACGCG GCAAGGGCTG CGCCTGCACT GCGAGATCGC GCCCGGGCTG 
GGCGGCTGGA CGGCCGACGC GCGCAAGCTC AAGCAGGCGG TGCTCAACCT GCTGTCCAAC 
GCCGTCAAGT TCACGCCCGA AGGCGGGCGG GTGACGCTGC GGGCTCGGCG GGCGGACGAA 
GGCGATGCGC ACGTGGCCGA GATCGCGGTG ATCGACACCG GCGTGGGCAT CGCGCCGGGC 
GATCAGGCCC TGGTGTTCGA GGAGTTTCGT CAGGCCAGCG GCAGCTATCT GCGCAAGTCC 
GAAGGCACCG GCCTCGGGCT GTCGCTGGTG CGGCGTTTCG TCGAACTGCA CGGCGGCACG 
GTCCGGGTCG ACAGCGTGCT CGGCCGAGGT TCCTCGTTCG TGATCAGGCT GCCCGAGCGG 
CCCCTGCCCG CAGCACTTTC GGCGGCTACG GCGACGCCGA GCGATTGA
 
Protein sequence
MFGELNQRQL EYLHDIHASG HHLLQLINDI LDLTKIEAGR MELELAPCDL AQLLESAIGL 
IRERATRQGL RLHCEIAPGL GGWTADARKL KQAVLNLLSN AVKFTPEGGR VTLRARRADE 
GDAHVAEIAV IDTGVGIAPG DQALVFEEFR QASGSYLRKS EGTGLGLSLV RRFVELHGGT 
VRVDSVLGRG SSFVIRLPER PLPAALSAAT ATPSD