| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0023 |
|---|
| Symbol | |
|---|
| ID | 6159813 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 28902 |
|---|
| End bp | 29813 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 641662768 |
|---|
| Product | NADP oxidoreductase coenzyme F420-dependent |
|---|
| Protein accession | YP_001789064 |
|---|
| Protein GI | 171056715 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5495] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.150455 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCACC CGCTCACGAC CCCTTTCAGC CGCGCTGCGC CGCCCTGGCC GCGCACCGCC
TTCATCGGCA TCGGTCGCGT CGCGGTGGTG CTGGCCCCGG CGCTCAAGCG GCTCGGCGTG
CCGATCGTCG CGCTCGCCAG CCGGCAGGCC ACCGCGGCGC AGCACCTGGC CGGGCAGTTG
CACGACGCCG CGGTGCTGAG TGCGCAAGAG GCGGTCGACC GCGCCGAGCT GGTCTGGCTG
ACGGTGCCCG ACGATGCCAT CGCGCCCACC ACCGCCGCGC TGCGCTGGCG ACCTGGTCAG
ACCGTGGTGC ATTGCAGCGG CGCCACCGAG CTGACGGCCT TGCAGGCCGC GGCCGACGCC
GGCGCGGTGG TGGCCGGTTT CCATCCGCTG CAGATCTTTT CCGACCCTGA ACTGGCGGCG
CAGCGGCTGG CCGGCAGCAG CGTGGCGATC GAGGCCGGCG GGCCGGCCGA GGCGCTGCTG
CAGCGCATCG CCGCCGGCCT GGGCCTGGCG GTGCTGCGCC TGCCGCCGGG CAGCCGCGCG
CTCTATCACG CCGGGGCGGC CTATGCCGCG AGCTACCTGC TGGCACTGCT CGACGAAGCC
GCGGCGGTCT GGCGCACGCT GGGCATCGAC GAGGCCGCCG CGTTGCGTGC GCTGCTGCCG
CTGGCGCACC TGACGCTCGA CGCCGCCGGC CAGCGCGGCC TGGCGCAGGC CCAGGCCGGC
CCGATCGCAC GTGGCGACGC CGGCGTGGTG CGGCGCCAGA TCGACGCGCT CGCCGGCATC
GGCGCACCGC ACGCCGCGCT CTACCGCGAG ATGGGCCGCC GCCAGCTCGA ACTGGCGCGC
CGTGCCGGCC GGCTCGACGC CGCCGCGCTG GCCCGGCTGG CCGCCGCGCT CGGGGTTCAG
GACGAGGCCT GA
|
|---|
| Protein sequence | MAHPLTTPFS RAAPPWPRTA FIGIGRVAVV LAPALKRLGV PIVALASRQA TAAQHLAGQL
HDAAVLSAQE AVDRAELVWL TVPDDAIAPT TAALRWRPGQ TVVHCSGATE LTALQAAADA
GAVVAGFHPL QIFSDPELAA QRLAGSSVAI EAGGPAEALL QRIAAGLGLA VLRLPPGSRA
LYHAGAAYAA SYLLALLDEA AAVWRTLGID EAAALRALLP LAHLTLDAAG QRGLAQAQAG
PIARGDAGVV RRQIDALAGI GAPHAALYRE MGRRQLELAR RAGRLDAAAL ARLAAALGVQ
DEA
|
|---|
| |