| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0017 |
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| Symbol | |
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| ID | 6159935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 19153 |
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| End bp | 22902 |
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| Gene Length | 3750 bp |
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| Protein Length | 1249 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 641662762 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001789058 |
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| Protein GI | 171056709 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0303219 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCAGC GACGATCACG ATTGCGTGCC CCTGACGCGA GCCTGCGCGA ACGCATCATC
TCCACCGGCG GCCTGTTCTC GGTGGCGGCG ATGGTGGCGC TGGTGCTGGT GCTGCTGTTC
CCGCGCGACA CGCTGATCGC GCGGCTGCAC ACCGAGGCCC GCAACGACCC GCTCAGCGCC
CACTACCTGA CCATCCTGCT GCGCAGCGAG TCCGACAACG CCGACCTGCG CCTGCTGCTG
GCCGAGCGCC ATCACGCGCT CGGCCAGCTC GAGCGCGCCG ACGCGGTGCT CACCCCGCTG
CTGGCCGAGC TGCCCGATCC GGCCCGGCAG CGCCGCGCCC GGCAGCTCCA TCTCGAGGTG
CGCCAGCGCC AGCTGGCGGC GCTGGCGCCG GCCAGCGCGC CGGCCCGGCA TCTGCGCGAC
GAGCTCCTGC ACGAGCTGAA GACCTTGCCG CAGGCCGACT GGACACCCGA GCAGCTGCTC
GATTTCGCCC GCCTCGCCAG CGAGCTCGGC GAGGCCGAAC TGGCGCGCCA GTTCCACGCC
CGCGGCGGGC CGGCGCTGGC GGTCGGCGCC GACAGCTTCG AGGACGCCGT GCGCAAGGCC
CTCGGTGCCG GCGACTACCT CGGCGCGGCA GGCCTGCACC GCGAGGCGAT GCAGGTCGCG
GCCTCGCCCG ACGAACGGCG CCAGCACCTG ATGGCGGCGC TGCGCATCCT GCAGTCGGGC
AACCGGCTCG AAGACGCGCT GCAGCTGGCG CGCGAGCACG ACGGCGTGGT CGGCAGCGAC
GACCGGCTGC TGCGCTACCT GATCGAGCTG TCGCTGGCGG CCAACCGGCC GGCCGTCGGC
GGCCCCTACG CGCGGCGCCT GATGCGCATG AGCCGGCACG AGGTGCGCGA GCCGGGCTGG
GCCGAGCGCC TGGCCGGCGC GCTGCTGCCG AGCGCCCACG CCGCCGAGCC GGCCGCGGCC
GCCGATCCCG CCGCCGGCGA CCCGCAGCGG CCGTTCGACG AGGCCACCTA CCTGCTCGCC
TACCAGACCT TCCTGGCCAC CGGCAACCAG GCCGACGCCT TTCGGGTGGC GCGCGCTGCG
GTGCGCAGGG CGCCCGAACT GCGGGCCTGG CGCGAACGGC TGGCGCAGGT CGCCGAGTGG
CACGGCCGCC CGGCCGACGC CCTGGTGCAG TGGCGCTGGC TGGCCGCGCA ATCGCCCGAG
CCGGCGCAGG CCGCGCACGC GATGGCCCAG GTGCTGCGCC TGGCGCCGGC GCTCAACGAC
CACGCCACGC TGCTCGACGC CTGGCAGCAG ATCGCCCGCC AGCGCCCGCT CAGCCAGGCC
GAGACGCTCG CGCTGGCCGC GCTGCACGAG CAGCTCGGCC AGCCGCAGGA CGCGCTGGCG
CTGCTGCGCG AACGCGATGC CGCCGATCCG CAGACGGTCT GGCTCGAGGC CCGCGTGGCC
CTGCTCGAAC GCCTGGGCGA CGTGCCCGCC ACCCTCGACG CGCTGGCGCA GCTGGTGGCC
CGCGACGGCG TCACCCGCGA GCGTGCGCTG CGCCTGGCCA CCCTGCACGC CGATCGCGGC
GACGTGCGCC AGGCCTACGA GGCGATCGCG CCGCTGGCCG ATCGGGTGCC CGAGGACGAC
GACGAGGTCT GGCGGCAGCT GGCCGAGCTG AGCTGGGCGC TGCAGCTCGA GCCCGAGGCG
CTGCGGGCGC TGCAGGTGCG GGCCCGGCGC GACGACTTCA GCGCCGACGA GGCCGATCAC
CTGATCGCGC TGCTGCGCGA GCGCCGGCCC GACGAAGCGG CGCAGCTGGC CGAGGCGACC
TGGCGGCGCC GGCAGAGCCC CGACCACCTG ATGCTTGCGA TCGAGCTGTG GTGGGCGCAG
CGCGACCTGG TCCAGCTGCA ACGGCTGTTC GCCTCGGTGA CGCCCGACGA GCAGGCCCGG
GTCGGCCGCG AAAGCGCCTT CCTGTACCTG CGTTCGCTGT GGCAGTCGGC CCGTGGTGAA
CACGCCGCCG CACGCCTGGA CATGCGGCGC GCGCTGGTCG CCGAGCCGCA GGACGTCGCG
CTGCGCAGCA CGCTGATCTT CATGCTGATC GAGGCCGGCG AGCGCGACGA GCTGGCCCGG
CTGGTCGACG AGACGGTGTC CGTCGGCGCC GCCGATGCGC GCCTGGATGC GGCCCTGGCG
GCCGCCTGGG GCGCGCTCGG CCAGCCGCGC CGCGCCCTGC CGTTCTGGCG CCGCCAGGCC
GCCGAGCGGC GTGGCGATGC GCTGTGGATG TTCGGTTACG CCGACGCCCT GCTGGCCGCC
GACTGGCCGC AGGTGACCGA GGCGGTGCAG CGCCAGGCGC TCGACGCGAT CCGCCGACGG
CCGGCTGCGC GCAGTGCCGA CGCCGCGCCG GCCGATGCCG AGTCGCGCGC CGTGATGCTG
CAGGTGGCAC GGCTGACGCT GGCGCGCGCG CCCGGTGATC CGAGCCTGGC GGTGCTGCGC
CGGCTGCTGC AGCAGCAAGG CGGGCCCGCC GCCGACCCGG CCTTCGACGC CGCTGCCGAC
GAGCTGGCGC TGAGCTGGCT GCTGTCGGGC GAACAGTTCG AGCCGGCGCG GGTCTGGCTG
TGGCAACGCT ACGCGCGTCT GCTCTCGGCG CCGCCGTGGG CCGCGCTGAT GCTGGCGCTG
CACGAGCGCG ATCTCGATGC GGTGCAGCGC CTGTACACCC GGCACCTGGC CACGCTGCCG
GCGTCGACCC GCATCGAGGC CCTGAGCGCG CTCGGCCGCC GTGCCGAGGC CCACGACCTG
CGCGTGGCCG AACTGGGTCG CCGCGACGAC GATGCCCTGC ACGAGGCGCT GGTCAACGAG
GCCTGGGCCC GTCCGCGCGC GCTCGAATGG GGCTGGACCC GGCACCGCAG CGGCGTGCAG
ACCGACGTCG CCGCGCTGCT GCTGCGCGCA CCGGTCGATG CTGCCACCCA GGCCGAGCTG
CAGTTCGAGC GCATCGGCCT GCGCAGCACC GACGCGCGCG CGCTGACCGG CGTGCCCGCA
CAGGCCGAGG CGCTGCTGCT GACCCTGCGC CACGCCATCG ACCCGGCCAG CGAGGCCACG
CTGACCCTGG GCCGCCACGG TGCCTGGGCC GACACCCCCC GCCTGGCCCT GGCCGCGCGC
ACCCGCCTCG ATGGCGGCGT GCAGCTGCAG GCCGCGATCG ACTGGAACCA GCCGACCGAA
GAAAGCAGCG CGCTCGCGGT GGCCGGCGTG CGCCACCGCC TGCTGCTGGC GGTCGACCTG
CCGATCGCGC CGACCACGCA GGCGCACGTC GAGCTGCAGG CGCTGGCCTT CGGCCTGCAG
GACGGCCCGC GGCTGGGCGG CGGCGTCGGC CTCGAATGGA CGCTCACCCA GTGGCTGCGT
CTGGCGCAGC CCGATCTGGC CGTGCGGGTG TTCGGCAGCC ACCGCCGCCA CCACGCTGCC
GACACCGTGC TGCCCGCCGC CACCGCCCGG CTCGACCCGT CGGGCAGCGT GCCCGGGGCC
GGTTTCTTCA TGCCCGCCGG TTACGCGCTG TACGGCGTCG GCCTGAGCTC GGGGGTGGCG
CTGCGCGAGG CCGCCAGCCG CGCCTGGCGG CCGTTTGCCG ACCTGCGCCT GACCCGCCAC
GACCAGCTCG GCGTCGGCCA CGGCGCCAGC CTCGGGCTGG CCGGCAGCCT GCTCGGCGGC
GACCAGCTGG CACTGTCGGT CAGCCTGCTG CGCGACGGCG CCGGCGGCAG CGGCCGCGAG
GCCGGCCTGC GTTACGCGCT GCGGTTCTGA
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| Protein sequence | MDQRRSRLRA PDASLRERII STGGLFSVAA MVALVLVLLF PRDTLIARLH TEARNDPLSA
HYLTILLRSE SDNADLRLLL AERHHALGQL ERADAVLTPL LAELPDPARQ RRARQLHLEV
RQRQLAALAP ASAPARHLRD ELLHELKTLP QADWTPEQLL DFARLASELG EAELARQFHA
RGGPALAVGA DSFEDAVRKA LGAGDYLGAA GLHREAMQVA ASPDERRQHL MAALRILQSG
NRLEDALQLA REHDGVVGSD DRLLRYLIEL SLAANRPAVG GPYARRLMRM SRHEVREPGW
AERLAGALLP SAHAAEPAAA ADPAAGDPQR PFDEATYLLA YQTFLATGNQ ADAFRVARAA
VRRAPELRAW RERLAQVAEW HGRPADALVQ WRWLAAQSPE PAQAAHAMAQ VLRLAPALND
HATLLDAWQQ IARQRPLSQA ETLALAALHE QLGQPQDALA LLRERDAADP QTVWLEARVA
LLERLGDVPA TLDALAQLVA RDGVTRERAL RLATLHADRG DVRQAYEAIA PLADRVPEDD
DEVWRQLAEL SWALQLEPEA LRALQVRARR DDFSADEADH LIALLRERRP DEAAQLAEAT
WRRRQSPDHL MLAIELWWAQ RDLVQLQRLF ASVTPDEQAR VGRESAFLYL RSLWQSARGE
HAAARLDMRR ALVAEPQDVA LRSTLIFMLI EAGERDELAR LVDETVSVGA ADARLDAALA
AAWGALGQPR RALPFWRRQA AERRGDALWM FGYADALLAA DWPQVTEAVQ RQALDAIRRR
PAARSADAAP ADAESRAVML QVARLTLARA PGDPSLAVLR RLLQQQGGPA ADPAFDAAAD
ELALSWLLSG EQFEPARVWL WQRYARLLSA PPWAALMLAL HERDLDAVQR LYTRHLATLP
ASTRIEALSA LGRRAEAHDL RVAELGRRDD DALHEALVNE AWARPRALEW GWTRHRSGVQ
TDVAALLLRA PVDAATQAEL QFERIGLRST DARALTGVPA QAEALLLTLR HAIDPASEAT
LTLGRHGAWA DTPRLALAAR TRLDGGVQLQ AAIDWNQPTE ESSALAVAGV RHRLLLAVDL
PIAPTTQAHV ELQALAFGLQ DGPRLGGGVG LEWTLTQWLR LAQPDLAVRV FGSHRRHHAA
DTVLPAATAR LDPSGSVPGA GFFMPAGYAL YGVGLSSGVA LREAASRAWR PFADLRLTRH
DQLGVGHGAS LGLAGSLLGG DQLALSVSLL RDGAGGSGRE AGLRYALRF
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