| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0004 |
|---|
| Symbol | |
|---|
| ID | 6161736 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 5756 |
|---|
| End bp | 6268 |
|---|
| Gene Length | 513 bp |
|---|
| Protein Length | 170 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641662749 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001789045 |
|---|
| Protein GI | 171056696 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.000415135 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGGGTCTTT TCGACATGTT CAAGAGCGAT TCGGGCGACA AGATGACGCC TCACCTCGCG
CTCGCCACCA GCCTGCTGTA CATGATGTCC GCCGACGGCG AGATGGATCA TGAAGAGATC
GGCCACCTGC TGTCCGTCCT GGGCGGGCAG TCCAGTGCCG ATGGCACGGT GGGGGTCGGC
GCCCAGAACC AGGCCCTTCT GGACAATGCG CTCAAGTACC GCAGGAAGAA CCCGGTCGAG
TTCTTCCTGA AGGAAGCCAC TCCCCTGCTG AGCGACGCGC AGAAGATGTG CATCCTCGTG
AACATGATCG ACTCGTCGCT CTCGGATGGC CAGCCCGAGC CCGAGGAGCA GGCGGTGTTC
GCCAAGTTCA TGCAGGCCTT CGGCGTGTCG GAGACCCGCT TCCAGCCCTT CTTCGAGGTG
ATCGTGCTGA AGAACGACCG TTCCGTCTTC ACCAAGCAGG ACCACCCGAA GAACAGTTCG
GGCTATCAGG TCAAGCTCAG CGTGCCCGCC TGA
|
|---|
| Protein sequence | MGLFDMFKSD SGDKMTPHLA LATSLLYMMS ADGEMDHEEI GHLLSVLGGQ SSADGTVGVG
AQNQALLDNA LKYRRKNPVE FFLKEATPLL SDAQKMCILV NMIDSSLSDG QPEPEEQAVF
AKFMQAFGVS ETRFQPFFEV IVLKNDRSVF TKQDHPKNSS GYQVKLSVPA
|
|---|
| |