| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1886 |
|---|
| Symbol | |
|---|
| ID | 4438913 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | + |
|---|
| Start bp | 1877840 |
|---|
| End bp | 1879702 |
|---|
| Gene Length | 1863 bp |
|---|
| Protein Length | 620 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 639673702 |
|---|
| Product | MutS family ATPase |
|---|
| Protein accession | YP_819579 |
|---|
| Protein GI | 116630426 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1193] Mismatch repair ATPase (MutS family) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.566906 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.00000000000303267 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGAATAATA CTGACGAAAT CGAATTTTCA CGTATACGTA AACTTGTCTC TCACTATGCT
GTTTCACCCG AAGCAAAAGA CAAAATTCTA GTTCAGCCAC TTGCCACTAA ATTAGTTAAA
GCAACTGCTT TACTTGATGA GACTGCAGAA ATGGTCTGGA TTTTAAATCA TGGATTACAC
ATACCCTTTA TTAGTTCAGA TGCCTTGACC CCAATTTTAA ATAAGGTCAA AAAAGGTTTT
ATCTTAAATC CAGCAGAATT AGAACAAGTA GCAGACTTCG TTAGAGTTAC GCGTCTATTA
GTACGCTTTT TTAACAAGCA AAGAAATAAT ACTCCAATTA TTGCAAGTTA TTGCGATACT
TTAACTATTC TAGACGCACT AGAAAGCGAA ATTTATAATG CTATCGAACG CGGACAAGTT
TCTGATAATG CAGACAAAGA TCTCGCTAAG TTAAGACAAA GAAGCAATAA ATTAAGCACG
AATATTCAAG ATACGCTGCA AAAATATTTG CAAAGTAAAA AATATCAAAC TATGATGCAA
GATTATCAGA TAATTCAAAA AGACAATCAT TATACCCTCC CGATTAAAGC AAGTTTTAAA
CATACTTTTG GTGGGAGTAT TATTGATCAT TCTAATAATG GAAATACAGT TTTTATAGAA
CCCACTAAAA TCGTGCATCT TACCCAAGAA AAAGCAACTG TTGAAAATCA GATTTATTTA
ATTGAAGCTC AAATTTTAGG TGATTTATCA GCAAAAATTT ACCAGGAATT ATCTCAGCTA
GAGGCAAATC TTAATATTAT TATTGACCTA GATTGTATCT TAGCTCGAGC AAAATACTCT
CAAAATATTA ATGGCAAACG ACCATTGTTA AATGAACAAA ATCAACTCCA ATTAAACGAA
ATGAGACACC CTCTTTTATC TAATCCGGTT CCTCTTTCAC TTAATTTAGA TTCTACTAAG
CGAGGTTTAA TAATCACAGG CCCTAATGCA GGCGGAAAGA CTGTCACTCT AAAAACAGCT
GGTTTGGCCA TTGCAATGGC AGAATTTGGA CTATTCTTAC CAAGTTCAGG GATTTGCTCA
ATTCCAGTAA TGACTGCTAT ATATACTTCA ATTGGCGATC ATCAGGACCT GGATAACTCT
CTGTCTACAT TCTCTGCTGA AATGAAACAA ATGTCTTACA TTGTCCAGCA TGCAACAAAA
TATAGTCTAA TTTTATTAGA TGAATTAGGC AGCGGTACAG ATCCAAACGA AGGTGCTGCC
CTTGCTATTG CTCTGCTGCA AGCATTACAG CTAAAAGGCA GTTTAATCTT AGCAACCACT
CACTATAGTG CAATAAAAGA CTATTCTACT AAGCATTCCG CTTTTATCAC TGCAGCTATG
GACTTTGATC TAAAGACACT TGAGCCAACA TATAAGTTAC TGTTAAATCA AATAGGAACC
AGCCGTGCTC TATGGATAGC TGAAAAGAAT GGGATGCCTC AAGAGGTTTT AACGCAAGCC
AATAATTTCT TAAATACTGG TAAATTTCCT TTAAATCAAA GCAAAATTAA ATTTGCAAAT
AATCAGAAAA AAATCAAATC GACAGTTTCT TTTAAAAAAG GTGATCGTCT TAAAGTTCCG
GAGTACGAAC AAGATGTTTT ATTCTATCAA AACTCGGATC TTGCAAATCA AATCATTATC
TTTGTTAATA AAACTTTTAA GACAATACCA GTTAAGGGAG CTAAGCTAGT TAGAAAGGCA
AAAGATCTTT ATCCAGAAGG TTACAATCTT GATCTATTAT TCATACAAGA TTGGAAAGAA
TATAAATTAA ACAGAGATTT AAATCGTGGC TCTAAAAAAG CCTGGAAAAA ATTAAAAAAA
TAG
|
|---|
| Protein sequence | MNNTDEIEFS RIRKLVSHYA VSPEAKDKIL VQPLATKLVK ATALLDETAE MVWILNHGLH
IPFISSDALT PILNKVKKGF ILNPAELEQV ADFVRVTRLL VRFFNKQRNN TPIIASYCDT
LTILDALESE IYNAIERGQV SDNADKDLAK LRQRSNKLST NIQDTLQKYL QSKKYQTMMQ
DYQIIQKDNH YTLPIKASFK HTFGGSIIDH SNNGNTVFIE PTKIVHLTQE KATVENQIYL
IEAQILGDLS AKIYQELSQL EANLNIIIDL DCILARAKYS QNINGKRPLL NEQNQLQLNE
MRHPLLSNPV PLSLNLDSTK RGLIITGPNA GGKTVTLKTA GLAIAMAEFG LFLPSSGICS
IPVMTAIYTS IGDHQDLDNS LSTFSAEMKQ MSYIVQHATK YSLILLDELG SGTDPNEGAA
LAIALLQALQ LKGSLILATT HYSAIKDYST KHSAFITAAM DFDLKTLEPT YKLLLNQIGT
SRALWIAEKN GMPQEVLTQA NNFLNTGKFP LNQSKIKFAN NQKKIKSTVS FKKGDRLKVP
EYEQDVLFYQ NSDLANQIII FVNKTFKTIP VKGAKLVRKA KDLYPEGYNL DLLFIQDWKE
YKLNRDLNRG SKKAWKKLKK
|
|---|
| |