Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LGAS_1318 |
Symbol | |
ID | 4439473 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactobacillus gasseri ATCC 33323 |
Kingdom | Bacteria |
Replicon accession | NC_008530 |
Strand | - |
Start bp | 1310893 |
End bp | 1312908 |
Gene Length | 2016 bp |
Protein Length | 671 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 639673151 |
Product | excinuclease ABC subunit B |
Protein accession | YP_815118 |
Protein GI | 116629946 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000791691 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 153 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTAGAC GACAAAAAAA CAAGAAATTT GAACTTGTCT CTAAGTTTCA ACCAGCAGGT GATCAAGAGC AAGCAATTAA AAAGTTGACT GATGGTTTTG AACAAGGTGA AAAGGCGCAG ATTTTAGAGG GTGCTACAGG AACTGGTAAA ACTTTTACTA TGGCGAATGT AATTGCCAAA TTAAATAAAC CTACTTTGGT AATTTCGCAT AATAAAACTC TTGTTGGACA GCTTTATGGT GAATTTAAAG AGTTTTTCCC TAAAAATGCC GTTGATTATT TTGTATCTTA CTATGATTAT TATCAGCCTG AAGCTTATGT ACCACAGTCG GACACATATA TTGAGAAGGA TTCATCAATC AATGATGAAA TTGACCAGTT ACGTCATAAA ACTACTAGTG ATTTAATGTC AAGAAATGAT GTAATTGTTG TTGCGTCAGT GTCTTGTATT TATGGTTTAG GTGATCCTAG AGAATATGCA GCTAGTGTAG TATCTATCTC TGGAGGTCAA GAAATTAGCC GTGATGTATT ATTGCGGGAT TTAGTGAATA TTCAATATGA TCGCAATGAT ATTGATTTTC AACGTGGCCG TTTTAGAGTC CGCGGAGATG TGGTAGAGAT TTTCCCTGCT GGTTATTCTG ATCATGCGTT TAGAGTTGAA TTTTTTGGCG ATGAAATTGA TCGGATTGTT GAAGTGAATT CCTTAACTGG TGAGGTAATT GGTGAACGTG AACAAGTTTC TATTTTCCCA GCAACGCACT TTGTTACTAA TGAACAAATT ATGCAAAGGG CTTTGGCTTC AATTAAAGAT GAAATGAATA TTCAGGTCAA AAAATTTGAA GGGGAAGGTA AGCTTCTAGA AGCTCAACGA ATTAAGCAAA GAACCACCTA TGATATGGAA ATGATGAGTG AAGTTGGCTA CACTAACGGA ATCGAAAACT ATTCTAGGCA TATGGAAGGG CGGAAAGCTG GGCAACCTCC GCATACTTTA CTTGATTTCT TTCCTGATGA TTTTCTAATC TTAATTGATG AATCACATGC TACCATGCCA GAATTAAAGG CGATGTATAA CGGAGACAGC GCTCGTAAGC AAACTTTGAT TGATTATGGT TTTAGATTAC CTTCAGCGCT AGATAATCGA CCACTAAAAT TAGAAGAATT TGAAAAGCAT GTAAATCAGA TAATGTATGT CTCAGCAACT CCCGGAGACT ATGAATTGAA TCAGACTGAT CATAAAGTGG AACAAATTAT TCGTCCTACT GGATTGCTTG ATCCAGAGAT TGAAGTTAGA CCAATTAAAG GACAAATTGA CGATTTAGTT GGTGAGATTA ATAAGCGAAT TGACCGTAAT GAACGTGTTT TTGTGACAAC TTTAACTAAA AAAATGGCAG AAGATTTGAC CGATTATTTG AAAGATCTTG GAATTAAAGT CCGCTATTTA CACTCAGATA TCAAGACATT AGAACGTCTA GAGATTATTA GGGACTTAAG ACTTGGCAAA TTTGACGTTT TAATTGGAAT TAATCTTTTG CGAGAAGGAA TTGATGTGCC GGAAGTGTCT TTAGTTGCAA TTTTAGATGC AGATAAGGAA GGATTTTTAC GCTCAACTAG ACCTTTAGTT CAAACGATTG GTCGTGCTGC CAGAAACTCA AATGGTAAGG TGATTATGTA TGCAGACTCA ATTACGGATT CGATGCGAGA AGCAATTGAT GCTACAGAAA GAAGACGTAG TTTGCAGATG AAGTTTAACA AGGAACATGG AATTACACCT AAGACTATTG TTAAACCTAT CAGGGATGTC ATTTCAATTA CTAAAGATAG TGATGAAAAG GAAAATAAAG AGAGTTTTGC TGATCTAAAC TTTGATGAAT TAACTAAGAA ACAAAAGCAA ACTATGATTA AAACTTTAAC TGCCCAAATG CAAGAAGCTG CGAAGAAACT AGATTTTGAA GAAGCAGCTA ACTTACGTGA TGCAATTATG GATTTACAAA AGCAGGTACA TGAAAAGAAA AAGTAG
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Protein sequence | MIRRQKNKKF ELVSKFQPAG DQEQAIKKLT DGFEQGEKAQ ILEGATGTGK TFTMANVIAK LNKPTLVISH NKTLVGQLYG EFKEFFPKNA VDYFVSYYDY YQPEAYVPQS DTYIEKDSSI NDEIDQLRHK TTSDLMSRND VIVVASVSCI YGLGDPREYA ASVVSISGGQ EISRDVLLRD LVNIQYDRND IDFQRGRFRV RGDVVEIFPA GYSDHAFRVE FFGDEIDRIV EVNSLTGEVI GEREQVSIFP ATHFVTNEQI MQRALASIKD EMNIQVKKFE GEGKLLEAQR IKQRTTYDME MMSEVGYTNG IENYSRHMEG RKAGQPPHTL LDFFPDDFLI LIDESHATMP ELKAMYNGDS ARKQTLIDYG FRLPSALDNR PLKLEEFEKH VNQIMYVSAT PGDYELNQTD HKVEQIIRPT GLLDPEIEVR PIKGQIDDLV GEINKRIDRN ERVFVTTLTK KMAEDLTDYL KDLGIKVRYL HSDIKTLERL EIIRDLRLGK FDVLIGINLL REGIDVPEVS LVAILDADKE GFLRSTRPLV QTIGRAARNS NGKVIMYADS ITDSMREAID ATERRRSLQM KFNKEHGITP KTIVKPIRDV ISITKDSDEK ENKESFADLN FDELTKKQKQ TMIKTLTAQM QEAAKKLDFE EAANLRDAIM DLQKQVHEKK K
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