| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1302 |
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| Symbol | smpB |
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| ID | 4439491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactobacillus gasseri ATCC 33323 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008530 |
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| Strand | - |
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| Start bp | 1292980 |
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| End bp | 1293435 |
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| Gene Length | 456 bp |
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| Protein Length | 151 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 639673135 |
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| Product | SsrA-binding protein |
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| Protein accession | YP_815103 |
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| Protein GI | 116629931 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0691] tmRNA-binding protein |
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| TIGRFAM ID | [TIGR00086] SsrA-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0000000000931328 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 106 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAACAAA AAGCAGATAA TTTGATTGCT CAGAATAAAA AGGCAAATCA TGACTATTTT
ATTAAAGAAA CTCTTGAAGC AGGAATTGCT TTAACTGGTA CTGAGATTAA ATCAATTCGT
GCTCGCAGAA TTAATTTACG TGATGGATAT GTTCAAATAA TTAACGGGTC TGCTTTTTTA
GAGAATGTTC ACATTAGTGA GTATAAAGAA GGTAATCGCT ATAATCACGA TCCTTTGAGG
TCACGGCGCT TGTTGCTTCA TAAAAGAGAA ATTGCTCGCC TAGCTGGAAT TCAGGCTCAA
CAAGGGATGG CAATTATTCC TTTAAAAGTT TATTTGAAAC ATGGTTTTGC TAAAGTACTA
ATAGGTGTTG GTCAGGGAAA GAAGCAATAC GATAAGCGAC AAACAATTAA AAAACGTGAT
CAAGATCGAG AAATTCATCG TAAGTATGGA ATTTAA
|
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| Protein sequence | MKQKADNLIA QNKKANHDYF IKETLEAGIA LTGTEIKSIR ARRINLRDGY VQIINGSAFL
ENVHISEYKE GNRYNHDPLR SRRLLLHKRE IARLAGIQAQ QGMAIIPLKV YLKHGFAKVL
IGVGQGKKQY DKRQTIKKRD QDREIHRKYG I
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