| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1113 |
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| Symbol | |
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| ID | 4439681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactobacillus gasseri ATCC 33323 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008530 |
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| Strand | - |
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| Start bp | 1117703 |
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| End bp | 1118824 |
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| Gene Length | 1122 bp |
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| Protein Length | 373 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 639672953 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_814923 |
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| Protein GI | 116629751 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000000049377 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 75 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAGAGA GTAAGACTAC CAAAAAAGAA GCAACAATGA CACTTGATAA GAAGGTCAAG
GAAGTTGTTA AGGAAGTTAA AAAAGATAAA CAAATCACTG AAAAAGAATT TACTGCTCAA
CTAATTAAGC CATATAATCT TCAAGGAAAA GCGGTAGATC AACTTGTACA AGAATTTGAA
GACAATGGAA TTAGTATCGT TGATGAAAAA GGCGAACCTT CTAAATTAGC TTTAAAGAAG
CAAAAAGATG TTGAAAAAGC TGAATTGAAA GATATGTCTG CACCTTCAAG CGTCAGAATG
AACGATCCGG TGCGGATGTA CTTGAAGGAA ATTGGACGTG TTTCATTGTT GAATGCGGAT
CAAGAAATTG CTTTAGCTAA GCGAATTGAA GCAGGCGATG AAGAAGCTAA ACAAGAATTA
GCAGAAGCTA ACTTACGTTT AGTTGTTTCT ATTGCTAAGC GTTATGTTGG TCGTGGAATG
TCCTTCTTAG ACTTAATTCA AGAAGGTAAC ATGGGCTTAA TGAAAGCTGT TGACAAGTTT
GATTATCGTT TAGGATTCAA ATTTTCAACT TATGCGACTT GGTGGATTAG ACAAGCAATT
ACTCGTGCAA TTGCTGACCA AGCTAGAACT ATCCGTATCC CAGTGCACAT GGTTGAAACA
ATCAACAAGT TGATTAGAAT TCAAAGACAA CTTTTGCAAG ATTTGGGAAG AGAACCAACT
CCGGAAGAAA TTGGTGCTGA AATGGACATG CCAACTGATA AGGTTCGTGA AATCTTGAAG
ATTGCACAAG AACCTGTTTC TCTTGAAACT CCAATTGGTG AAGAAGATGA TTCTCACTTA
GGTGACTTTA TCGAAGATAA AGATGCAACT AGTCCTGAAC AACATGCTTC TTATGAACTA
TTGAAGGAAC AACTTGAAGA AGTTCTTGAT ACTTTAACTG ACCGTGAAGA AAATGTGTTG
CGTTTACGTT TCGGTCTAGA TGATGGACGT ACTCGTACTC TTGAAGAAGT TGGTAAGGTA
TTTGGAGTAA CTCGTGAGCG TATCAGACAG ATCGAAGCTA AAGCTTTGCG GAAGTTACGT
CACCCAAGTC GTTCAAACCA ATTAAAGGAT TTCTTAGATT AA
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| Protein sequence | MAESKTTKKE ATMTLDKKVK EVVKEVKKDK QITEKEFTAQ LIKPYNLQGK AVDQLVQEFE
DNGISIVDEK GEPSKLALKK QKDVEKAELK DMSAPSSVRM NDPVRMYLKE IGRVSLLNAD
QEIALAKRIE AGDEEAKQEL AEANLRLVVS IAKRYVGRGM SFLDLIQEGN MGLMKAVDKF
DYRLGFKFST YATWWIRQAI TRAIADQART IRIPVHMVET INKLIRIQRQ LLQDLGREPT
PEEIGAEMDM PTDKVREILK IAQEPVSLET PIGEEDDSHL GDFIEDKDAT SPEQHASYEL
LKEQLEEVLD TLTDREENVL RLRFGLDDGR TRTLEEVGKV FGVTRERIRQ IEAKALRKLR
HPSRSNQLKD FLD
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