| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1061 |
|---|
| Symbol | |
|---|
| ID | 4439734 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | - |
|---|
| Start bp | 1064547 |
|---|
| End bp | 1065365 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 639672902 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_814872 |
|---|
| Protein GI | 116629700 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01716] transcriptional activator, Rgg/GadR/MutR family, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00012994 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 88 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTATTG GCGAGTTGTT AAAACAAACA AGACAATCCC TTGGTTTAAC TCAAACAGAG
ATGGCAGCTG ACATTGTTTC AACGTCTTAT TATTCAAAAG TGGAACGAAA CATTCATCAA
ATTAGTGCGG ATGAATTGAT CGCTATTCTC AACAGACATC ATATTGATAG CTCAGCTTTC
TTTGTTCATT TTTCTAATTT TAATTCACAG GAAAAGAGAG ATTTTCTAAA AGAAATAGGG
GATGCGTATG AGAAGAAAGA CAAGCAAGAA CTTTTGACAA TCAAAAAAGA TATTGATCAA
TTACCGGATT CGAGACAAAA GAAGTATTAT CAGCTGCAAA TTGACTTGGT TTTGAATGTT
TATTTAACAA AAGCAGCTGA TATTCCAGCT GAATTAAAAA ATGATCTAAA GAAGTTTGTT
TTTCAAGATA ATAATTGGAA TGAAAATTCA CTGCAGTTGT TTAGAGAAAC AATTCGTGTT
TACGATATAG ATGAGCTTAG TTTTTTAGTA AATGCAATTT TGGCTAAGTA TCACCAGCCA
GCTGAGTTAC CAATAAAAAC GCAGGAGATC TTAGGGGGCA TTTGTATTAA TTTTTTAGAT
AAGTGTTATG AGCACAACAC ACCTGAATTA ATAAAACAAC CACTCCAATA TATTTCTAAA
CTTTCAAATG CTTCGGAATT GCTGTTAGTT AAAATACTTA AAAATTATTA TCAAGCAGTT
TTTAATAAAA ATGCAGATGA AGTAAAAGTT ATTAGTGATG TTCTTGAAAA AGCAGGATGG
AAAGATTTCG TTTCTGTTTT ACCTCATTTA AATAGCTAA
|
|---|
| Protein sequence | MTIGELLKQT RQSLGLTQTE MAADIVSTSY YSKVERNIHQ ISADELIAIL NRHHIDSSAF
FVHFSNFNSQ EKRDFLKEIG DAYEKKDKQE LLTIKKDIDQ LPDSRQKKYY QLQIDLVLNV
YLTKAADIPA ELKNDLKKFV FQDNNWNENS LQLFRETIRV YDIDELSFLV NAILAKYHQP
AELPIKTQEI LGGICINFLD KCYEHNTPEL IKQPLQYISK LSNASELLLV KILKNYYQAV
FNKNADEVKV ISDVLEKAGW KDFVSVLPHL NS
|
|---|
| |