| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0945 |
|---|
| Symbol | |
|---|
| ID | 4439829 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | + |
|---|
| Start bp | 947717 |
|---|
| End bp | 948316 |
|---|
| Gene Length | 600 bp |
|---|
| Protein Length | 199 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 639672800 |
|---|
| Product | HAD superfamily hydrolase |
|---|
| Protein accession | YP_814771 |
|---|
| Protein GI | 116629599 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.000164408 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 75 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAAAA ATATTATCTT TGATTTTGGA AATGTCATCA TGAATTATAG TCCCGATGAA
ATTTTGAATC ATTATGAATT AAGTCCAGCA GACCATGATT TATTAAGAAA GAGTATTTTT
GAATCTAAAG AATGGAGCGA GATTGACGCT GGAAAGATTT CAGAAAAAGA AGCAACTGAA
ATCTTTATGG ATCGTGTACC AGATCGTCTA AAGGGTAAGG TTAAGCAAGT TATGGCAACT
TGGCCAGAAA ATGTTGATTT CTATGAACCA GTCTTTAATT ATATGGAAAA ATTGCGCCAA
GATGGTTATA AGATCTATGG CTTATCTAAT ACAGGGATGC AATTTGCAAA TTTTGTTAAA
AACTCTGAAA TGGGAAATTA TTTCGATGGC TATGTTTTTT CTGCTCAAGA AAAACTAATG
AAGCCAGATA GAAGAATTTA TGAAAAATTA ATTGCTCGTT ATATGTTAAA GCCTGAAGAG
AGTTTATTTA TAGATGATTT GAAAGCAAAT ACTGATGCAG CAAAGAAGTT AGGCATGCAG
GCTTTTACGT TTAAAATTGA TAAGCTAGGC GAATTACAAG ATTATGTCGC TAGTCATTAA
|
|---|
| Protein sequence | MLKNIIFDFG NVIMNYSPDE ILNHYELSPA DHDLLRKSIF ESKEWSEIDA GKISEKEATE
IFMDRVPDRL KGKVKQVMAT WPENVDFYEP VFNYMEKLRQ DGYKIYGLSN TGMQFANFVK
NSEMGNYFDG YVFSAQEKLM KPDRRIYEKL IARYMLKPEE SLFIDDLKAN TDAAKKLGMQ
AFTFKIDKLG ELQDYVASH
|
|---|
| |