Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LGAS_0916 |
Symbol | |
ID | 4439940 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactobacillus gasseri ATCC 33323 |
Kingdom | Bacteria |
Replicon accession | NC_008530 |
Strand | + |
Start bp | 913680 |
End bp | 915761 |
Gene Length | 2082 bp |
Protein Length | 693 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 639672772 |
Product | DNA topoisomerase I |
Protein accession | YP_814743 |
Protein GI | 116629571 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA [COG0551] Zn-finger domain associated with topoisomerase type I |
TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000916095 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.000814664 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCCTACTA AACGAAAAAA TAAAAAGAAT TTAGTTATTG TCGAGTCTCC ACATAAGGCT AAGACAATTG AAAAATATTT AGGTAGAAAT TATCATGTTA TTGCTTCAAA AGGTCATATT CGTGATTTAC CCAAGTCCCA AATGGGTGTT GACGTCGAAC ACGATTATGA ACCAAAGTAT ATTTCTATTC GCGGAAAAGG CGATACGATT AAAGAATTAA AGAGCGAAGC CAAAAAGGCA AAGTATGTTT ATCTCGCTTC CGACCCCGAT CGTGAAGGAG AAGCTATTGC CTGGCACGTT GCTCATGCTT TGAATTTAGA TCCTAAAGAG CACAACCGTG TTGCTTTTAA CGAAATTACT AAAGATGCGG TTAAAAATGC CTTTAAGAAT CCAAGAACCA TTGATATGGA TATTGTAGAT GCTCAACAAG CACGTCGTGT TCTTGACCGC TTGGTGGGTT ATTCAATTAG TCCTATCTTG TGGCAAAAAG TTAAGAAAGG CTTATCCGCT GGACGTGTTC AATCAATTGC CTTGAAGTTA GTAATTGATC GTGAAAACGA AATTAAGAAC TTTAAGCCAG AAGAATACTG GACAATTGAT GCTGATTTTG AAAAAGGTAA GGAAAAGTTC AAGGGAGCCT TTTATGGCAT TAAGGGTAAG AAACAAGACT TACCAAATAA TGAAGCAGTT CAAGATATTT TAAAACAAAT TGATAAACGT AAGAACTTTG AAGTTACCAA AGTAGTTAAA AAAGAAAGAA GACGTCAGCC TGCTGCGCCT TTTACTACCT CAACTATGCA GCAAGAAGCT AACAAGCGTT TAGGATATCG TACTCGTCGA ACAATGAGAA TTGCTCAATC TCTTTATGAA GGGGTTAACC TGGGTAAAGG ATCAGTTGGT TTAATTACTT ATATGCGTAC TGATTCTAAA CGTATTGCTA ATGTTGCTAA GCATGAAGCT TCAAAATTCA TCCATGAAGA ATATGGTGCA AATTATGCAG CAATCAAGCC GCAACATTTT AAAAACGATG CTGATGCTCA AGATGCCCAC GAAGCAATTC GTCCAACTTC AGCTTTCAGA ACGCCAGCTT CAGTTAAAGA ATATTTGACT ACTGAAGAAT ATCGTCTCTA CACCTTAATT TGGTCAAGAT TTATTGCTAG TCAAATGACG CCAGCTGTTT ACGATACAGT AAGAGCTGAT ATTGAACAAA ATGACGTTAC CTTTAGAACA ACTGGTTCAA AACTTAAGTT TGCTGGTTTT ACTAAGGTTT ATGATAACCA AAAAGAAAAG AATAATGAAT TACCTGAGTT AAATGAAGGC GATAAGGTTA AGCTTAAAAA GACCGATGAT CGTCAGCACT TTACTCAGCC ACCAGCAAGA TATACTGAAG CCAGTTTAGT TAGAGCTCTT GAAGAAAATG GCGTTGGTCG TCCATCAACT TATGCACCAA CAATTGATAC GATTCAAAAA CGTTATTACG TAAAACTTGA AGGAAGATCA ATTGTACCGA CTGAATTAGG TGAAATTGTC GATAAGTTAA TCGAAGAATT CTTCCCAGAT ATTGTTAACG TCGATTTCAC CGCTCAACTA GAAGATGATC TTGACGGCGT TGAAGTAGGA AAGAAGAACT GGATCAAAGT AGTAGATGAA TACTACAAGC CATTTTCTAA AGAATTAGAC AAGGCTGATC AACAAATTGA AAAAGTTCAA ATTAAGGATG AACCAGCTGG TTTTAACTGC GACATTTGTG GTGCACCGAT GGTAATTAAG ATGGGACGTT ATGGTAAGTT TTATGCTTGC TCGCGCTTCC CAGATTGCCG TAACACTAAG CCAATTGTTA AAAAGGTTGG CGTAACTTGT CCTAAGTGTG GTAAGGGAGA AGTTATTGAA AAGAAGTCTA AACGTAATCG TAAGTTCTAT GGCTGCTCTC GTTATCCAGA TTGTGACTTT GTATCTTGGG ATCAACCAAT TGGTCGTAAT TGTCCAAATG ATGGTCATTT CTTAGTTCAA AAGAAGAATA AGAAGGGCTT AGTTATTCTT TGCCCAAACG GCGATTATCG TGAAGAACCA GAAGAAAATT AA
|
Protein sequence | MPTKRKNKKN LVIVESPHKA KTIEKYLGRN YHVIASKGHI RDLPKSQMGV DVEHDYEPKY ISIRGKGDTI KELKSEAKKA KYVYLASDPD REGEAIAWHV AHALNLDPKE HNRVAFNEIT KDAVKNAFKN PRTIDMDIVD AQQARRVLDR LVGYSISPIL WQKVKKGLSA GRVQSIALKL VIDRENEIKN FKPEEYWTID ADFEKGKEKF KGAFYGIKGK KQDLPNNEAV QDILKQIDKR KNFEVTKVVK KERRRQPAAP FTTSTMQQEA NKRLGYRTRR TMRIAQSLYE GVNLGKGSVG LITYMRTDSK RIANVAKHEA SKFIHEEYGA NYAAIKPQHF KNDADAQDAH EAIRPTSAFR TPASVKEYLT TEEYRLYTLI WSRFIASQMT PAVYDTVRAD IEQNDVTFRT TGSKLKFAGF TKVYDNQKEK NNELPELNEG DKVKLKKTDD RQHFTQPPAR YTEASLVRAL EENGVGRPST YAPTIDTIQK RYYVKLEGRS IVPTELGEIV DKLIEEFFPD IVNVDFTAQL EDDLDGVEVG KKNWIKVVDE YYKPFSKELD KADQQIEKVQ IKDEPAGFNC DICGAPMVIK MGRYGKFYAC SRFPDCRNTK PIVKKVGVTC PKCGKGEVIE KKSKRNRKFY GCSRYPDCDF VSWDQPIGRN CPNDGHFLVQ KKNKKGLVIL CPNGDYREEP EEN
|
| |