Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LGAS_0828 |
Symbol | |
ID | 4439973 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactobacillus gasseri ATCC 33323 |
Kingdom | Bacteria |
Replicon accession | NC_008530 |
Strand | + |
Start bp | 813886 |
End bp | 815394 |
Gene Length | 1509 bp |
Protein Length | 502 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 639672685 |
Product | amino acid transporter |
Protein accession | YP_814657 |
Protein GI | 116629485 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0531] Amino acid transporters |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000137053 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 77 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAAAAG ACAAATCCGT CAAAATTGGA TTAAAAACTC TAGTTTTGAT GATCTTTTCA GCCATTTTTG GCTTTAGCAA TTCATTAACT GCCTATTATC AAATGGGGTA TGCAAGTATT GTTTGGTATA TTATAACCGC AATTTTATTC TTTTTGCCTT CTGCACTTAT TTTTGCGGAA TATGGAGCAG CTTTTAAGGG AGTTAAAGGT GGAATTTTTT CTTGGCTTAA AGGATCAGTT AGTGAAAAAA CTGCATTTAT TGGTACTTTT ATTTGGCTAG CTGCGTGGGT TGTTTGGCTG GTGTCATCGA CTCAATTTTT CTTGGTATCA GTGTCGACTG CAATTTCAGG TCATGATACA ACGCAAAATT GGCATTTTTT AAACTTGTCA TCGACACAAT TATTGGGAAT TTTAGAAGTA ATATTTTTAG TAGTAGTGAC TTTTTTTGCC GCTAAAGGTG TCGATAAAAT TGCTGCTGTA AGTAATGTTG GTGGCTTTTT TACTTTAGCT ATTACAATTG GCTTTACTTT AGTATCTATT TTAGTTTTCT TTTTGAATCA AGGACATCTA GCAGAACCGT TGACTGTGCA ATCATTAGTT CATTCTCCTA ATCCGGCTTT CCAGTCTCCA ATTGCTGTGG TGTCATTCAT TGTTTATGCA TTATTTGCTT ATGGCGGTTT AGAAACTTCA GCGGGAGTAA TTGATTCTGT TGATAAACCT GAAAAGACTT TTCCTAAAGC TTTGATTACA GCTATGGTCT GGATGACAGC TTTATATGTC TTGAATATTT TAATGTGTGG AGTTGCTGCA AATTGGAGTA GCGAATTAAG TGGCAAAAAT GTTGATTTGG CCAATGTGGA ATATGTTTTA ATCAACAATT TGGGAGTAGA AACAGGAAAG GCTTTTGGAC TTTCTCATTC AGCTTCCCTA ACACTGGGTG CTACATTTTC TCGTTTTGCC GGATTAGCTG ATGTATTGGC TGGAATTTCA GCAGCATTTT TAATGGTTTA TTCACCTGTT AAATCGTTTA TTGAAGGTTG TGATCCTAAA CTTTTACCTA AAAACTTGGT TAAATTGAAT AAACATGGCA TGCCAGAACG TTCAATGTGG GTTCAGGCGG TGATTGTTAG TGTTATTATC TTATTTATTT CTTTTGGTGG TAATGCAGCA GGTCAGTTTT ATACTATTTT GATGGATATG ATGAATGTTT CATCGTCAGC ACCTTACTTA TTTTTGATTG GAGCTTATCC TTTCTTTAAG ATGAAGCAAG GAATTGATCG TCCATTTGTA TTTATTGAGG GAAAGAAGCG TGTCTGGACG GTAACAATTG TAGTTTGGCT TGTAGTTGCA ATTGGTATTA TCTTTACTTG TGTTGAGCCA CTCTTTACTG GAGATTATGC AACATCCTTC TGGACTGCTA TTGGACCAGT AGCCTTTGGA ATTATTGCTT GGGTATATTA TTCATATCAA GAAAGAAAAA GCATTACTGT AGTGGATGAA GAAGAATAA
|
Protein sequence | MKKDKSVKIG LKTLVLMIFS AIFGFSNSLT AYYQMGYASI VWYIITAILF FLPSALIFAE YGAAFKGVKG GIFSWLKGSV SEKTAFIGTF IWLAAWVVWL VSSTQFFLVS VSTAISGHDT TQNWHFLNLS STQLLGILEV IFLVVVTFFA AKGVDKIAAV SNVGGFFTLA ITIGFTLVSI LVFFLNQGHL AEPLTVQSLV HSPNPAFQSP IAVVSFIVYA LFAYGGLETS AGVIDSVDKP EKTFPKALIT AMVWMTALYV LNILMCGVAA NWSSELSGKN VDLANVEYVL INNLGVETGK AFGLSHSASL TLGATFSRFA GLADVLAGIS AAFLMVYSPV KSFIEGCDPK LLPKNLVKLN KHGMPERSMW VQAVIVSVII LFISFGGNAA GQFYTILMDM MNVSSSAPYL FLIGAYPFFK MKQGIDRPFV FIEGKKRVWT VTIVVWLVVA IGIIFTCVEP LFTGDYATSF WTAIGPVAFG IIAWVYYSYQ ERKSITVVDE EE
|
| |