| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0544 |
|---|
| Symbol | |
|---|
| ID | 4440254 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | + |
|---|
| Start bp | 573929 |
|---|
| End bp | 575434 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 639672401 |
|---|
| Product | ABC-type amino acid transport system, permease and periplasmic component |
|---|
| Protein accession | YP_814379 |
|---|
| Protein GI | 116629207 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component
[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0576109 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 7.662799999999999e-28 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTAA TGAAGAAAAC AAAACTATTT AGCTTCTTCT TTGCATTTCT ACTCTTCTTC
TCACTTGGTG CCGCTTTTAT TCAACCAGCT CAAGCAGCTA GTGAAAAAAA GGTTGCAGAA
GGCAGCGTTT TAAAGAAGAT TAAGAAGAGT GGAGAGCTAG TAGTTGGTAC ATCTGCCGAC
TATCCACCGT TAGAGTTTAC AGCAAGTGAA AACGGTAAGA CTAAATATGT TGGAGTCGAT
ATTGAATTAG CTAAAGACAT TGCACAAGAC TTGGGCGTTA AGCTTGTTAT TAAGAATATG
TCTTTTGACT CGTTGTTAGT TGCACTTGAA ACAGGAAAGG TAGACATGGT TATTTCTGCT
ATGACACCTA CTCCTGAAAG AAAACAAAGT GTGGCTTTTT CAAAAATTTA CTACAAGCCA
AGTGGTGAAT ATTTTTTAGT AAATAAAAAA GATAAGGATA AATATACAAG CATCCAAAGC
CTTAAGGGTC AAGCTATTGG TGCGCAAACA GGAAGCAACC AATATAATTT AGTTAAATCG
CAAATGAAAG ATTCTAAGTT AAAAGGCCTT GGGAAAATTA ATAACTTGGT CTTAGCTTTA
CAATCTGGTA AGGTTTCGGC AGTTGTCGTT GAAGAATTAA TCGCTAAAGC TTATGCGGAA
AACAATAATA GCTTAGCCGC AGTACGTTCA AACTTGAAAG AAACACAGTC TGGTAATGCA
GTAGCAATTG CCAAGGGACA AGATGAATTA GTTGCTCAGG TGAATAAAAC TATTGATCAT
GTTCAAAAGA AAGACTTAAT TAATAAACAA TATCTTCCAG CAGCTGCCAA ATATATGAAA
ACGGAAAAGA AAAGTAATAC TTTTGCTAAA TATATTCCAT ACTTCTTCAA GGGCATCTGG
TACACAATTG TAATTACTGT CTTTTCTGTC ATTATTGGTA TTGTTTTAGG AATTATTTTA
GCTTTAATGC GCCTGTCTAA GAATCCAATT TTACACTGGC TTGCCGTTTG CTACATTGAA
TTTATTCGTG GTACGCCTCA AATGGTTCAA ATTTTGTTTG TATACTTTGG AATCGGATAT
TTAATTTCTA ATCTGTCAGC TTTAGTTGCT GGTATTATCG CTATCGGTCT TAATTCTGGA
GCTTATGTGG CTGAGGATAT TAGGTCAGGA ATCGATTCTT TGCCAAAAGG ACAAATGGAA
GCAGCACGTT CCTTAGGCTT AAGTCGTCAG AAAGCATTTA GATATGTAAT TATTCCTCAG
GCAATAAAGA ATATTTGGCC AGCCTTAGGT AATGAATTTA TTACTTTATT GAAGGATAGT
TCCTTGGTTT CAGTAATTGG AGTAGCTGAA TTAATGTATC AAACACAATT GGTTCAGACT
TCAACTTATA AGGGTGTATT ACCATTATTC ATTGCCATGA TTATTTACTT TATTATGACT
TTCTCATTAA CGAGATTGTT GAATCATTTT GAAAAGAGGA TGAAGCGTAA TGACAGCAAT
GATTAA
|
|---|
| Protein sequence | MSVMKKTKLF SFFFAFLLFF SLGAAFIQPA QAASEKKVAE GSVLKKIKKS GELVVGTSAD
YPPLEFTASE NGKTKYVGVD IELAKDIAQD LGVKLVIKNM SFDSLLVALE TGKVDMVISA
MTPTPERKQS VAFSKIYYKP SGEYFLVNKK DKDKYTSIQS LKGQAIGAQT GSNQYNLVKS
QMKDSKLKGL GKINNLVLAL QSGKVSAVVV EELIAKAYAE NNNSLAAVRS NLKETQSGNA
VAIAKGQDEL VAQVNKTIDH VQKKDLINKQ YLPAAAKYMK TEKKSNTFAK YIPYFFKGIW
YTIVITVFSV IIGIVLGIIL ALMRLSKNPI LHWLAVCYIE FIRGTPQMVQ ILFVYFGIGY
LISNLSALVA GIIAIGLNSG AYVAEDIRSG IDSLPKGQME AARSLGLSRQ KAFRYVIIPQ
AIKNIWPALG NEFITLLKDS SLVSVIGVAE LMYQTQLVQT STYKGVLPLF IAMIIYFIMT
FSLTRLLNHF EKRMKRNDSN D
|
|---|
| |