Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LGAS_0402 |
Symbol | |
ID | 4438875 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactobacillus gasseri ATCC 33323 |
Kingdom | Bacteria |
Replicon accession | NC_008530 |
Strand | - |
Start bp | 419831 |
End bp | 421762 |
Gene Length | 1932 bp |
Protein Length | 643 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 639672260 |
Product | ABC transporter ATPase |
Protein accession | YP_814245 |
Protein GI | 116629073 |
COG category | [R] General function prediction only |
COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.930478 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 0.0019806 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATTATTG CACAAGCTCA AGACCTCGAA CAACGTTTTG GAGGCAATAC CATCTTCAGT AACATTTCTT TCTCGGTTCC TGACAATGCC AGAATTGGTC TTGTGGGACC TAACGGAGCC GGAAAAACTA CCTTATTAAA GATCATGACT GGTCAACAAG AACCAACTAG TGGTCAATTT ACTATTAATA AGGGATTAAA AGTCGGCTAT ATCGCCCAGG AAAATGGTCT CGATGAAGAC AAAACAATCT GGGATGAAAT GCTTACTGTC TTTAATGATT TAATCGAAAA AAATAAAAAA ATCACCAAAA TGCAAGAGCA AATTGCTGAC CATCCCGAAG ATGAAGACTT GCTCAAGCGG TATGATCAAT TAGCTTACGA CTTTGAACAA GAAGGCGGCT TTACCTACCA AGCTGAAATT AAGAGTATTC TTAACGGTTT TAATTTTAAA GAAAACACTT GGAATAAAGT AATTGGCACT CTTTCTGGCG GTGAAAAGAC ACGACTTGCC TTTGTTAAAT TGCTTTTACA AAAGCCACCA GTACTGCTGC TTGACGAACC TACTAACTAC CTTGACTTAG ATACTTTAGA TTGGTTAGAA GCGTTTTTAA AGAACTATCA AGGCGCAATT ATTACAGTTT CTCACGACCA GTACTTCTTA GATCACTTAG CTAATCAAAT TTTTGAATTA AACTTTGGAA AACTGACTAC TTTCAAGGGT AATTACAGCC AATACGTTAA AGAACGTGAA TTGATGGATA GCCAGCAAGA AGCTGCTTAT GAAAAGCAAC AAGAAAAGAT CAAAAAAGAA GAAGAGTTCA TTCAAAAGAA CTTAGTTCGT GCTTCAACTA CTAAACGTGC GCAAAGTCGG CGTAAAGTTT TAGACAAGAT GGAGCGAATC AAGCCACCTA AGCACAAGCA AAAAGTTCGT ATTAACTTCA CTAGTGAACG CCCTTCTGGT AAGGAAGTGT TGATCGCTAA AGATCTAACC ATTGGCTATC CTGATAAAGT GATGGTTTCT GATATTGACT TCCAAGTTAA TAAGAATGAC CGTGTTGCTA TTATCGGCCC TAACGGAATT GGTAAGTCTA CCTTGCTCAA AACCATTATG AAAAAGCTTG AACCAAAAGA TGGTTCAATT AAATATGGTG CAAGTTTAGA TATCGGTTAC TACGACCAAG AACTTCAGAG TTTAGATCCT TCAAAGACTG TTCTTGATAC AATTTGGGAC CGTCACAAGA CAATGCCTGA AAAAGATGTC CGCTCTATTT TAGCTTCCTT CTTATTCACT GCCGAAGACA TTGATAAGAC CGTTGGCCAA TTATCTGGTG GTCAAAAGGC TCGACTTACT TTAACTGTTT TGTCTCTTGA AAAAGACAAC TTTTTACTAA TGGATGAACC TACCAACCAC CTAGATATTG AAGCTAAAGA AGTGCTTGAA GAAGCATTAG ATAATTACGA TGGAACACTG CTATTTGTTT CTCACGACCG TTACTTCATT AATGAGTTAG CTAACAAGAT TATTTCGGTT CGCGACGGCC ACGCTAAGAT CTATAATGGT AACTATTCTT ACTACTTAGA TGAAAAGGCT AAGCAAGCTG CAGCAGCTCA AGAAGCAGAA GCACAAACAG CAGAAGCTGA AACTACTCCA GCAGCTAGTC AAAATAAGGG CAAGCTATCT TACCAAGAAC AAAAGGCACG CGATTCTCAA AAGAGAAAAT TAGAACGTGC AGTCAGCGAC GCTGAGGCTA AAATTGAAAA ATTAGAAGCA GAAGAAAAAG AAATTCAAAC TGAAATGGCA AATCCAGATA TTGCCGCTTC ATTTGAAAAG CTTGGACCAC TGCAAGAAAA ACTATCCGCT GTTCAAAAGC AATTAGACCA GGCAAATAAT GACTGGGAAA ATGCCTTGGA TGCATTAGAT GAATTTGAAT AA
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Protein sequence | MIIAQAQDLE QRFGGNTIFS NISFSVPDNA RIGLVGPNGA GKTTLLKIMT GQQEPTSGQF TINKGLKVGY IAQENGLDED KTIWDEMLTV FNDLIEKNKK ITKMQEQIAD HPEDEDLLKR YDQLAYDFEQ EGGFTYQAEI KSILNGFNFK ENTWNKVIGT LSGGEKTRLA FVKLLLQKPP VLLLDEPTNY LDLDTLDWLE AFLKNYQGAI ITVSHDQYFL DHLANQIFEL NFGKLTTFKG NYSQYVKERE LMDSQQEAAY EKQQEKIKKE EEFIQKNLVR ASTTKRAQSR RKVLDKMERI KPPKHKQKVR INFTSERPSG KEVLIAKDLT IGYPDKVMVS DIDFQVNKND RVAIIGPNGI GKSTLLKTIM KKLEPKDGSI KYGASLDIGY YDQELQSLDP SKTVLDTIWD RHKTMPEKDV RSILASFLFT AEDIDKTVGQ LSGGQKARLT LTVLSLEKDN FLLMDEPTNH LDIEAKEVLE EALDNYDGTL LFVSHDRYFI NELANKIISV RDGHAKIYNG NYSYYLDEKA KQAAAAQEAE AQTAEAETTP AASQNKGKLS YQEQKARDSQ KRKLERAVSD AEAKIEKLEA EEKEIQTEMA NPDIAASFEK LGPLQEKLSA VQKQLDQANN DWENALDALD EFE
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