Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LGAS_0285 |
Symbol | |
ID | 4438725 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactobacillus gasseri ATCC 33323 |
Kingdom | Bacteria |
Replicon accession | NC_008530 |
Strand | + |
Start bp | 325155 |
End bp | 328826 |
Gene Length | 3672 bp |
Protein Length | 1223 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 639672144 |
Product | DNA-directed RNA polymerase subunit beta' |
Protein accession | YP_814129 |
Protein GI | 116628957 |
COG category | [K] Transcription |
COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.00000000001636 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGATCGACG TAAATAAGTT TGAAAGTATG CAAATTGGTT TGGCTTCTCC AAACAAGATC AGAAGTTGGT CTTATGGCGA AGTTAAAAAG CCAGAAACTA TCAACTATCG TACTTTGAAA CCAGAAAAAG ATGGTTTGTT CGATGAAAGA ATTTTCGGAC CAACTAAGGA CTGGTCTTGT GCTTGTGGTA AGTACAAGGG TATTCGCTAT CGCGGTATTG TGTGTGACCG GTGTGGTGTA GAAGTTACTT CTGCTAAAGT TAGAAGAGAA CGTATGGGCC ACATCGAATT AGCTGCACCA GTTTCACATA TCTGGTATTT CAAAGGTATT CCATCTCGTA TGGGATTAGT GTTAGATATT TCACCTCGTG CACTTGAAGA AGTAATATAT TTTGCTGCTT ATATTGTAAT TGACGCAGGT GATACTGATC TTGAAGATAA ACAACTTCTT ACAGAAGCTG AATATCGTGA AAAGAAAGCA AAATTCGGTA ACCGTTTTGA AGCTAAGATG GGTGCTGAAG CTGTAAAGGA ACTTCTTGAA CAAGTAGATA TTGACAAAGA AGTTCATGAT TTAAAAGAAG AATTAAAGAC TGCTACTGGT CAAAAGAGAA CTCGTGCTAT CAGAAGATTA GATATCTTAG ATGCATTTAA GAATTCAGGT AATAAGCCTT CATGGATGGT TATGGATTGT ATTCCAGTTA TTCCGCCTGA TTTAAGACCA ATGGTTCAAC TTGATGGTGG TCGTTTCGCA ACTTCTGATT TGAATGATTT ATATAGACGT GTAATTAATC GTAATAATCG TTTAAAGAGA TTGTTAGACT TAAATGCACC TAGAATTATC GTTCAAAATG AAAAACGTAT GCTTCAAGAA GCTGTAGATG CATTAATTGA TAACGGTAGA CGTGGTCGTC CAGTTGTAGG ACCAGGTAAC CGTCCACTTA AATCTCTTTC TCATATGTTA AAGGGTAAGC AAGGACGTTT CCGTCAAAAC TTGCTTGGTA AGCGTGTCGA CTACTCAGGT CGTTCAGTTA TCGATGTTTC ACCTAAGTTG AAGTTTTATC AATGTGGTGT TCCACGTCCA ATGGCTTTAG AGTTGTTTAA GCCATTTGTG ATGCATGAAT TAGTAAAACG TGGTTTAGCA TCTAACATTA AGAATGCTAA GCGCAAGATT GATCGTGAAG ATGACGATAT CTGGGACATC TTAGAAGATG TAATTAAAGA AAGACCAGTT CTTTTGAACC GTGCACCTAC TCTTCACCGT TTAGGTATCC AAGCATTCGA GCCAGTTTTG GTACCTGGTA AATCAATTCG TCTTCACCCT CTTGCTTGTG AAGCCTATAA CGCCGACTTC GATGGTGACC AGATGGCCAT TCACGTTCCA TTATCTGATG AAGCTGTAGC AGAATCACGT TTGCTTATGC TTGCTGCTCA CCATATCTTG GCTCCTAAGG ATGGTAAGCC AATTGTTACT CCTTCTCAGG ATATTGTTTT AGGTAATTAC TGGTTAACTC AAGCAGAACG TGGTCGCGAA GGCGAGGGTA TGATTTTTGA CTCACCAGCT GAAGCAGCTA TTGCATATGC AAATGGTGAT ATTCACTACC ATACTCGCAT TGGTTTAGCA GCTGATTCAA TGCCTGAAAA GCCATGGCCA AAGGGATATG AACACGGAAT TTTTGTAACT ACCTATGGTA AGTTAGTCTT CAACCAAATT TTCCCTAAGG ATTTCTTCTA TATTAATGAT CCTACTCAAG AAAATCTTAC CCATCCCGTA GATGAAAGAT ATTTCTTGCA ACCAGGTGAA GATATCCATG AAAAGCTAGA TAATATGAAA CTTGGAAAGG CCTTTAAGAA AGGTTTCTTA TCAGATTCTA TTGCTCAAAT TTACAAGGAT TATAAGGTTC AAAGAACTTC TGATTTCTTG GATGACTTGA AGGAATTAGG CTACACTGTA TGTACTACTT CTGGTTTGAC TATTGGTGTT GAAGATATTC CTACAATTAC TGATAAGGAC GATATTGTGG CAGAAGCTCG TAAGAAGGTT GACGTGGTTT CTAAGCAATA TCGTCGTGGT TTGATTACTG ATGAAGAACG ACATGATCGA GTGATTAGCA TTTGGAATAA TTGTAAAGAT ATTGTTCAAA ATGAAATTGC TCAAATTCAT GCTCCAAGAA ACCCAATCAC AATCATGGCA GATTCCGGTG CTCGTGGTAA CATTTCTAAC TTTACCCAGC TTGCTGGTAT GCGTGGCTTG ATGGCTGCTC CTAACGGAGG AATGATGGAA ATTCCTGTTA CATCAAACTT CCGTGAAGGA TTATCCGTTT TGGAAATGTT CATGTCCACT CACGGTGCTC GTAAAGGTAT GACCGATACC GCGTTGAAGA CTGCTAACTC AGGTTACTTA ACTCGTCGTT TGGTAGACGT AGCTCAAGAC GTTATTATTC GTGAAGAAGA TTGTGGTACT GATCGTGGCT TGACTGTTCA TGCAATTACT GAAGGCGATG AAATGATTGA ACCATTATTT GATCGTCTAG TAGGCCGCTA TACTTCTAAG AGTGTCTATG ATCCAGAAAC TCATGAAGTT ATCTGCCCAG CAGATGTCTT GATGGATGAA GATATGGCTC ATAAGATTGT TGATGCTGGC GTCACTGAAG TAACTATTCG CTCCGTGTTT ACTTGCAACA CTCAACACGG TGTATGTAAG AAATGTTATG GTATGAACCT TGCTACTGGT GACGATGTTG AAGTTGGTGA AGCAGTAGGT ACTGTTGCTG CTCAATCTAT CGGTGAACCT GGTACTCAGT TAACTATGCG TAACTTCCAC AACGGTGGTG TTGCTGGTGC TGCAGATATT ACTCAAGGTT TACCTCGTGT TCAAGAATTG TTTGAAGCTC GTAACCCTAA GGGACGTGCA ACAATTTCTG AAGTAACTGG TGAAATAACT TCAATTGAAG AAGATCCAGC AGAACACACT CGTCAAATTA CTGTAAAAGG TCAAACAGAT ACTCGTACTT ATGATGTACC ATATACTGCA TCTGTAGCAG TTGCTGAAGG TGACCATGTT GTACGTGGAG ATAAATTGAC TCTTGGTTCT ATCGATCCTA AAGAATTGAT TCGTGTACGT GATGCATTGA CTACTGAAAA ATACATTCTA AGTGAAATTC AAAAAGCTTA TAGAATGCAG GGTGTAGAAA TTGCTGATAA ACACGTTGAA GTTATGGCAC GTCAAATGCT TCAAAAGGTT CGTATTCTTG ATCCAGGTGA AACTGATATC TTACCAGGTG AATTGATGGA TATTGGTGAA TTTAAGGCAA GAAACCGTGA AGTAATTATT TCTGGTGGTA TTCCTGCAAC AGCACAAAGT GTAATTCTTG GTATTACCAA GGCCGCTCTT GAAACTAACA GTTTCTTGTC TGCAGCTTCA TTCCAGGAAA CTACTCGTGT TCTTACTGAT GCTTCTATTC GTGGAAAGAA CGATCCATTA CTTGGTCTTA AGGAAAATGT TATTATCGGT AAGATTATTC CTGCCGGTAC TGGTATGCCT GTTTACCGTG AAATGGAACC TAAGGTTGAC GTTCCTGAAG ATGAAAAGAA AAAGTCAGTT TATTCTATAG CTGATATTGA GAAGAAATTA GCCGCAGCTG ATGCAGAGAA AGATAAAGGC TCAGCTGACT AA
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Protein sequence | MIDVNKFESM QIGLASPNKI RSWSYGEVKK PETINYRTLK PEKDGLFDER IFGPTKDWSC ACGKYKGIRY RGIVCDRCGV EVTSAKVRRE RMGHIELAAP VSHIWYFKGI PSRMGLVLDI SPRALEEVIY FAAYIVIDAG DTDLEDKQLL TEAEYREKKA KFGNRFEAKM GAEAVKELLE QVDIDKEVHD LKEELKTATG QKRTRAIRRL DILDAFKNSG NKPSWMVMDC IPVIPPDLRP MVQLDGGRFA TSDLNDLYRR VINRNNRLKR LLDLNAPRII VQNEKRMLQE AVDALIDNGR RGRPVVGPGN RPLKSLSHML KGKQGRFRQN LLGKRVDYSG RSVIDVSPKL KFYQCGVPRP MALELFKPFV MHELVKRGLA SNIKNAKRKI DREDDDIWDI LEDVIKERPV LLNRAPTLHR LGIQAFEPVL VPGKSIRLHP LACEAYNADF DGDQMAIHVP LSDEAVAESR LLMLAAHHIL APKDGKPIVT PSQDIVLGNY WLTQAERGRE GEGMIFDSPA EAAIAYANGD IHYHTRIGLA ADSMPEKPWP KGYEHGIFVT TYGKLVFNQI FPKDFFYIND PTQENLTHPV DERYFLQPGE DIHEKLDNMK LGKAFKKGFL SDSIAQIYKD YKVQRTSDFL DDLKELGYTV CTTSGLTIGV EDIPTITDKD DIVAEARKKV DVVSKQYRRG LITDEERHDR VISIWNNCKD IVQNEIAQIH APRNPITIMA DSGARGNISN FTQLAGMRGL MAAPNGGMME IPVTSNFREG LSVLEMFMST HGARKGMTDT ALKTANSGYL TRRLVDVAQD VIIREEDCGT DRGLTVHAIT EGDEMIEPLF DRLVGRYTSK SVYDPETHEV ICPADVLMDE DMAHKIVDAG VTEVTIRSVF TCNTQHGVCK KCYGMNLATG DDVEVGEAVG TVAAQSIGEP GTQLTMRNFH NGGVAGAADI TQGLPRVQEL FEARNPKGRA TISEVTGEIT SIEEDPAEHT RQITVKGQTD TRTYDVPYTA SVAVAEGDHV VRGDKLTLGS IDPKELIRVR DALTTEKYIL SEIQKAYRMQ GVEIADKHVE VMARQMLQKV RILDPGETDI LPGELMDIGE FKARNREVII SGGIPATAQS VILGITKAAL ETNSFLSAAS FQETTRVLTD ASIRGKNDPL LGLKENVIIG KIIPAGTGMP VYREMEPKVD VPEDEKKKSV YSIADIEKKL AAADAEKDKG SAD
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