| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0086 |
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| Symbol | |
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| ID | 4440442 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactobacillus gasseri ATCC 33323 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008530 |
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| Strand | - |
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| Start bp | 99354 |
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| End bp | 100967 |
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| Gene Length | 1614 bp |
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| Protein Length | 537 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 639671947 |
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| Product | ABC-type amino acid transport system, permease and periplasmic component |
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| Protein accession | YP_813936 |
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| Protein GI | 116628764 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component
[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0796672 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 0.210719 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGTCAA AAATAAGATG GTTTAGTGCT TTATTAGCCC TAATTTTAAG TTTAGTTATC
GGTTTTAGCT CTAATTCTAG TCAAACCGAA GCGGCTAAAA AAGAAGCACC CCTAAAAATA
GGTATGGAAG CTAATTACCC ACCATACAAT TGGACTCAAA CAACCGATGC AAATGGTGCA
GTTCCAATTG ATGGATCTAA GCAATATGCA AATGGATATG ATGTACAAAT CGCAAAAATT
ATCGGTAAAA AGCTTCATCG TAAAGTTGTC GTTGAAAAGA CCGAATGGGA TGGTCTATTA
CCAGCTTTAA CTTCTGGCAA AATTGATTTA ATTATTGCTG GTATGTCTCC TACTGCTGAA
CGTAGAAAGG CAATCAACTT CTCTGTACCA TACAGAAAGA GTACTTTCGT AGTTATTACA
AGCAAGACTG GAAAATTTGC TCAAGCAAAA GGCTTAAATG ATTTTAAAGG CGCAAAATTA
ACTGCTCAAC AAGGTACATT GCACTATGAT CTAATTAAGC AATTACATGG CGCTAAGCGT
GAACCAGCAA TGAGAAGCTT TTCTGCAATG CGTCAAAGCT TACAATCAGG TACTATTGAT
GGTTATGTAG CAGAAGATAT TGAATACCAA AGTTACAAGG CAGTTAACCC TAACATCGTT
GCCGTTAACT TAAACAAGAT GCAAGGATTC AAAGTTGACC ACGATGATTC AATTACATCA
ATTGGTGTTA AGAAAGGCAA CACTGAATTA CTTAACCAAG TTAATAGCAT TTTAAATGGT
ATTTCTAAGA AAAAGCGCGA CCAATTAATG GCTGATGCTG TAAAGGAACA GCCTCAAGCA
GGTGGCAGCA AGAAAGAAAA CTGGTTTATG TCAATTATGC ATCGCTATGG TTCAATGATC
CTTGGCGGTG TTGGAATGAC TCTTCTTTTA GCTTTAGTTG GTACTATTGT TGGTTTCTTC
ATTGGTTTAC TTGTGGGTAT TGTTAGAACT ATCCCAACTC CTAAGTCTAC TGGTAAGAAG
TGGGGCTTAA AGATTGTTGA TTGGATTTTA GCAGTTTATA TTGAAGTGTT CCGTGGAACT
CCTATGATGG TTCAAGCAGC TGTTATCTAC TACGGAATTG CCCAATTATG GCACCTTAAC
TCAAACCGTA CAGTAGCTGC TCTAGTAATT GTTTCAATTA ATACTGGTGC TTACTTAGCC
GAGGTTATTC GTGGTGGTAT TAACGCTACC CCTAAAGGTC AATTTGAAGC AGCTTCTGCT
ATCGGTATGA CTCACTCACA ACAAATGTGG CATATCATTT TACCACAAGC AATTAGAAAC
TGTTTGCCAT CAATTACTAA CGAATTTATT GTTAACATTA AGGATACTTC AGTATTAAGT
ATTATCTCTG TATCAGAATT GTTCTTTGTT GGTACAACTG TTGCCAGTCA AACCTTCCAA
TTCTTCCAAA CTTACTTCAT TATTTCAATG ATCTACTTAA TTTTGACATT CTCAATTACT
AGAATCTTTA ATTTCATTGA AAAGAAGCTT GAAGGTCCAA AGAACTACAA CTTAATGGCT
AATCAATTAC AAGTAGAAGA TCCAAAGGAG ACTGGATTTG AACATGAACA ATAA
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| Protein sequence | MKSKIRWFSA LLALILSLVI GFSSNSSQTE AAKKEAPLKI GMEANYPPYN WTQTTDANGA
VPIDGSKQYA NGYDVQIAKI IGKKLHRKVV VEKTEWDGLL PALTSGKIDL IIAGMSPTAE
RRKAINFSVP YRKSTFVVIT SKTGKFAQAK GLNDFKGAKL TAQQGTLHYD LIKQLHGAKR
EPAMRSFSAM RQSLQSGTID GYVAEDIEYQ SYKAVNPNIV AVNLNKMQGF KVDHDDSITS
IGVKKGNTEL LNQVNSILNG ISKKKRDQLM ADAVKEQPQA GGSKKENWFM SIMHRYGSMI
LGGVGMTLLL ALVGTIVGFF IGLLVGIVRT IPTPKSTGKK WGLKIVDWIL AVYIEVFRGT
PMMVQAAVIY YGIAQLWHLN SNRTVAALVI VSINTGAYLA EVIRGGINAT PKGQFEAASA
IGMTHSQQMW HIILPQAIRN CLPSITNEFI VNIKDTSVLS IISVSELFFV GTTVASQTFQ
FFQTYFIISM IYLILTFSIT RIFNFIEKKL EGPKNYNLMA NQLQVEDPKE TGFEHEQ
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