Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LEUM_1241 |
Symbol | |
ID | 4423842 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 |
Kingdom | Bacteria |
Replicon accession | NC_008531 |
Strand | - |
Start bp | 1235069 |
End bp | 1236367 |
Gene Length | 1299 bp |
Protein Length | 432 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 639674938 |
Product | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
Protein accession | YP_818712 |
Protein GI | 116618341 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00483871 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACAATTA TTTCAAGTTC AAGTAAAATT TCAGATATTA AAGATTATCT TGATGAGCAA AAAATTGCTT ATAATAGTCG AGCAAAGAAG GCTGAACTAT TAGCTTTGGC ACAAGGAAAG ACTCCTGAAC AAGCGGCAGC AGCTGGAAAA GCTTCAAAGC CAAAATCAGC CAAAAAGTCT GGTCCACTAA AAAATCCTGA GTACGACAAG GCAACCAAAG CGTTAATTGC TGAGTATAAA GCAGCAAAAC AAATAACATA TGCAGCACTT TCAAAGCGTT TAGCTGAGCC CTTTAACTTA GATGAAGAAA ACATCGAACG TCTGATGGAA AAAGTTGAAG ATGCCGGTAT AGCAATTGTT GATGACAATG GTGATCCAGC GCCAGAAGTG TTAAAGGCCA AGCAGAACAA ACCCACTGAT CAAGAGTTAG CAGAAGCCGA GGAAACCCCA GCTGGTATTA AAATTAACGA TCCAGTGCGT ATGTACCTCA AAGAAATTGG CCGTGTCAAT TTGTTGAAGG GAAATGAAGA AATTGATATC GCTAAGCGTA TTGAAAATGG GGACGTCGAA GCCAAGCAAG AGTTAGCAGA AGCCAACTTG CGGTTGGTTG TCTCGATTGC CAAGCGTTAC GTTGGTCGTG GTATGCAATT CTTGGATTTA ATCCAAGAAG GAAATATGGG CTTAATGAAA GCCGTAGATA AGTTCGATTA TACCAAAGGA TTTAAGTTCT CAACGTATGC TACATGGTGG ATTCGTCAGG CTATTACACG TGCTATCGCC GATCAAGCGC GTACGATTCG TATTCCAGTC CACATGGTTG AAACGATTAA TAAGCTGATT CGTATACAGC GTCAATTGTT ACAAGATTTG GGACGTGAAC CTCTTCCGGA AGAAATCGGT GCTGAAATGG ATTTGACGGC CGACAAAGTA CGTGAAATCT TAAAAATTGC TCAAGAACCA GTATCTCTTG AAACACCTAT TGGTGAAGAA GATGATTCTC ATTTGGGTGA TTTCATCGAA GATAATGAGG CAGTTTCTCC AGCTGATTCT GCAGCATATG AAATGCTCAG GGAACAATTG GAATCTGTTT TGGATACATT GACTGATCGA GAAGAAAATG TCTTGCGTTT GCGCTTCGGA TTAGAAGACG GACGTACACG TACATTGGAA GAAGTTGGCC GTGTATTTGG TGTAACACGT GAACGTATTC GTCAAATTGA AGCGAAAGCG TTACGAAAGT TACGTCATCC AAGTCGTTCA AAACAATTGA AGGATTTCAT GGATGAGAGT ACGAATTAA
|
Protein sequence | MTIISSSSKI SDIKDYLDEQ KIAYNSRAKK AELLALAQGK TPEQAAAAGK ASKPKSAKKS GPLKNPEYDK ATKALIAEYK AAKQITYAAL SKRLAEPFNL DEENIERLME KVEDAGIAIV DDNGDPAPEV LKAKQNKPTD QELAEAEETP AGIKINDPVR MYLKEIGRVN LLKGNEEIDI AKRIENGDVE AKQELAEANL RLVVSIAKRY VGRGMQFLDL IQEGNMGLMK AVDKFDYTKG FKFSTYATWW IRQAITRAIA DQARTIRIPV HMVETINKLI RIQRQLLQDL GREPLPEEIG AEMDLTADKV REILKIAQEP VSLETPIGEE DDSHLGDFIE DNEAVSPADS AAYEMLREQL ESVLDTLTDR EENVLRLRFG LEDGRTRTLE EVGRVFGVTR ERIRQIEAKA LRKLRHPSRS KQLKDFMDES TN
|
| |