Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LACR_1981 |
Symbol | rpoB |
ID | 4432639 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactococcus lactis subsp. cremoris SK11 |
Kingdom | Bacteria |
Replicon accession | NC_008527 |
Strand | - |
Start bp | 1872498 |
End bp | 1876088 |
Gene Length | 3591 bp |
Protein Length | 1196 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 639667679 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_811576 |
Protein GI | 116512669 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGCAGGAC ATGACATAAA ATACGGTAAA CACCGTACAA GACGCAGTTT TTCACGTATT AAAGAAGTAA TCGGTTTGCC AAACCTCATC GAAGTTCAAA CATTAAGTTA TAAAAACTTC CTCGATGAAG GTCTTGCAAA TGTCTTCAAA GAAATGTTTC CAATCGACAA CTTTGCGGGT ACAATGGAAC TCGAATTTGT TGGTTATGAA ATGAAAACCC CAAAATACAC TGTTGAAGAA GCTCGCGCAC ATGACGCAAA CTATTCAGCA CCTATCTATG TAACCTTCCG TCTTGTAAAT AAAGAAACTG GTGAATTAAA AACACAAGAA GTCTTCTTTG GTGACTTCCC ACTCATGACT GAAATGGGGA CATTTATCAA TAATGGTTCA GAACGTTTGA TCGTCAGTCA GTTGGTACGT AGTCCAGGTT CATATTTCCA CCTTAAAACG GATAAAAATG GTCTTGAAAG TTTTGGACAT ACCACAATTC CTAACCGTGG AGCTTGGTTT GAGTTGGATA CAGATGCTAA AGGCATTGGT TATGTTCGTA TTGATCGTAC TCGTAAATTA ACTTTCACAA CAATGCTTCG TGCGCTTGGA TTTGGTTCAG ATGACGAAAT CCTTGAATTG TTGGGTGAAA CTCAACTTTT GACAGACACA ATTGCAAAAG ATGTTCATAA AAATCCAGCT GACACTCGTG TAGAAGAAGC CCTCAAAGAC ATCTATGACC GCTTGCGTCC AGGAGAACCA AAAACAGCAG ACAGCTCACG TGGCTTACTT GTTGCGCGTT TCTTCGATCC AAAACGTTAT GATTTTGCTC CTGTTGGACG TTATAAATTT AACAAAAAAC TAGCTCTTAA AAATCGTTTG CTTGGTTTGA CTTTGGCTGA GCCAATTGTT GATCCAGAAA CTGGCGAAAT TCTTGTTAAT ACAGATACAC TTGTGACTCG TGACGTGCTC GATTTAATCG AACCATTGCT TGATAATGGT CTTGGAAACT TCGTTGTTGA ACCTTCTGAC GATGCAGTAA TTCCAGAACC AATCACTTTG CAAAGTATTA AAGTTTATTC TCCTAAAGAT TCAGAACGTG TTGTGACATT GCTCTCAAAT GGTAATCCAG ATTCAGAATG TCGTGTCTTG ACACCAGCCG ATGTTATTTC AAACATCAGC TACTGGCTTG GACTTGCTGA AGGAATTGGT AAAGTAGACG ATATTGACCA CTTAGGTAAC CGTCGTATTC GTTCAGTTGG TGAATTACTT CAAAACCAAG TACGTATCGG ACTTTCACGT ATGGAACGTG TCATTCGTGA ACGTATGTCA TCTTCAGAAA ACGAAAATAT CACACCGCAA GGTTTGATTA ACATTCGTCC TGTAACAGCT TCAATCAAAG AATTCTTTGG TTCATCACAG TTGTCACAAT TTATGGACCA ACATAATCCT TTGTCTGAGC TTTCACACAA ACGTCGTTTC TCTGCCTTAG GACCTGGTGG TATCTCTCGT GACCGTGCTT CATATGAAGT GCGTGACGTT CACTACACTC ACTATGGCCG TATGTGTCCT ATTGAAACAC CTGAAGGACC AAACATCGGT TTGATTAACA ACTTGTCATC ATATGCCAAA GTTAATGAAT ATGGTTTCAT CATGTCACCA TATCGTCGTG TTGACCGTGT GAATGGAATT GTTACTGACG AAGTTGAATA TTTGACTGCC GATGAAGAAG ATAACTACAC TGTAGCCCAA GCGAACTCAC CATTGACTGA TGACAGTCGT TTTGCTAACG AAACAGTTAT GGCTCGTCAT ACAGGTAACA ATATTGAAGT TGAAGCTTCA ACAGCTGACT ATATGGATGT TTCACCTAAA CAGGTTATCG CCGTCGCTGC TGCTTGTATT CCTTTCTTGG AAAACGATGA CTCCAACCGT GCCCTCATGG GTGCCAACAT GCAACGTCAA GCAGTTCCAT TGATTGACCC ACATGCACCT TGGATTGGTA CTGGTATGGA ACATCAAACC GCTCGCGACT CAGGAGCTGC CCTTCTTGCT AAGCATGCAG GTGTAGTTGA ATATGTTGAC GGTAATGAAA TCCGTGTTCG CCGTACATCT GGTGAACTTG ATATTTACAA TATTACAAAA TATCGTCGTT CTAACTCAGG AACTTCTTAT AATCAACGTC CATTGGCTCG TCTTGGCGAA AAAGTTGAAA AAAACGACAT CATCGCTGAC GGTCCATCTA TGGAAAATGG AGAAATGGCC CTTGGTCAAA ATCCACTCGT TGCCTATATG ACTTGGGAAG GTTATAACTT CGAGGATGCC GTAATCATGT CTGAACGTTT GATTAAAGAT GACGTTTATA CATCAATCGC AATCGAAGAA TATGAATCAG AGACTCGCGA TACAAAACTT GGCCCTGAAG AAATTACACG CGAAATTCCA AACGTCGGGG ATGAAGCACT CAAAAACCTT GATGAATCTG GAATTATCCG TATTGGTGCC GAAGTTAAAG ATGGTGATTT GCTTGTTGGT AAAGTAACAC CTAAGGGTGA AACTGACCCA ACACCAGAAG AACGTTTGCT TCGTGCAATC TTCGGTGAAA AAGCTCGTGA AGTTCGTGAT ACTTCACTTC GTGTTCCTCA CGGTGGAGGC GGTATCGTTC ATGACGTTCG CGTATTTACC CGTGAAAATG GTGATGAATT ACCATCAGGT GTGAATAAAC TCGTTCGTGT CTTCATTGCT CAAAAACGTA AGATTCACGT TGGGGATAAA ATGGCCGGTC GTCACGGTAA CAAAGGGGTT GTTTCAAATA TCGTTCCCGT GGAAGATATG CCTTACTTAC CAGATGGAAC ACCGATTGAT ATCATGTTGA ACCCACTTGG GGTACCATCA CGGATGAATA TTGGACAAGT TATGGAGCTC CATTTAGGTA TGGCTGCTCG TACACTTGGT ATTCACATTG CGACACCAGT GTTTGATGGA GCCTCTGATG AAGATATCTG GGATACTGTT AAAGAAGCTG GTATGGCTGC TGATGCGAAA ACAGTTCTCT ATGACGGACG TACTGGTGAA CCATTTGATA ACCGAATTTC AGTCGGTGTC ATGTACATGA TTAAACTTCA CCACATGGTT GATGATAAAC TCCATGCACG TTCAGTTGGT CCTTACTCAC TCGTTACACA ACAACCGCTC GGTGGTAAAG CACAGTTCGG TGGACAACGT TTCGGGGAAA TGGAAGTTTG GGCGCTTGAA GCTTATGGTG CTGCCAATGT TCTTCAAGAA ATCTTAACTT ACAAATCAGA TGACGTAATT GGACGTACGC GCGCCTATGA AGCTATCGTT AAGGGTGAAC GTATTCCTAA ACCAGGTCTT CCTGAATCAT TCCGCGTATT GGTTAAAGAA TTACAATCAC TTGGTCTTGA TATGAAAGTC TTCGATGCTG ATCGTAATGT TCTTGACTTG CGTGAATTGG ATGAAGATGA AGTAATGACT CGTCCAGATA ATACAGAAAT TACTCCGGAA ATGCTTGAAG CACAAGAAGC AATTGTTGCA CAAGCAGAAG CTGAAGAAGA AGCTTTGATT AACGCTGATA TTGAAAAATA A
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Protein sequence | MAGHDIKYGK HRTRRSFSRI KEVIGLPNLI EVQTLSYKNF LDEGLANVFK EMFPIDNFAG TMELEFVGYE MKTPKYTVEE ARAHDANYSA PIYVTFRLVN KETGELKTQE VFFGDFPLMT EMGTFINNGS ERLIVSQLVR SPGSYFHLKT DKNGLESFGH TTIPNRGAWF ELDTDAKGIG YVRIDRTRKL TFTTMLRALG FGSDDEILEL LGETQLLTDT IAKDVHKNPA DTRVEEALKD IYDRLRPGEP KTADSSRGLL VARFFDPKRY DFAPVGRYKF NKKLALKNRL LGLTLAEPIV DPETGEILVN TDTLVTRDVL DLIEPLLDNG LGNFVVEPSD DAVIPEPITL QSIKVYSPKD SERVVTLLSN GNPDSECRVL TPADVISNIS YWLGLAEGIG KVDDIDHLGN RRIRSVGELL QNQVRIGLSR MERVIRERMS SSENENITPQ GLINIRPVTA SIKEFFGSSQ LSQFMDQHNP LSELSHKRRF SALGPGGISR DRASYEVRDV HYTHYGRMCP IETPEGPNIG LINNLSSYAK VNEYGFIMSP YRRVDRVNGI VTDEVEYLTA DEEDNYTVAQ ANSPLTDDSR FANETVMARH TGNNIEVEAS TADYMDVSPK QVIAVAAACI PFLENDDSNR ALMGANMQRQ AVPLIDPHAP WIGTGMEHQT ARDSGAALLA KHAGVVEYVD GNEIRVRRTS GELDIYNITK YRRSNSGTSY NQRPLARLGE KVEKNDIIAD GPSMENGEMA LGQNPLVAYM TWEGYNFEDA VIMSERLIKD DVYTSIAIEE YESETRDTKL GPEEITREIP NVGDEALKNL DESGIIRIGA EVKDGDLLVG KVTPKGETDP TPEERLLRAI FGEKAREVRD TSLRVPHGGG GIVHDVRVFT RENGDELPSG VNKLVRVFIA QKRKIHVGDK MAGRHGNKGV VSNIVPVEDM PYLPDGTPID IMLNPLGVPS RMNIGQVMEL HLGMAARTLG IHIATPVFDG ASDEDIWDTV KEAGMAADAK TVLYDGRTGE PFDNRISVGV MYMIKLHHMV DDKLHARSVG PYSLVTQQPL GGKAQFGGQR FGEMEVWALE AYGAANVLQE ILTYKSDDVI GRTRAYEAIV KGERIPKPGL PESFRVLVKE LQSLGLDMKV FDADRNVLDL RELDEDEVMT RPDNTEITPE MLEAQEAIVA QAEAEEEALI NADIEK
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