Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ksed_20950 |
Symbol | rpoB |
ID | 8373599 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Kytococcus sedentarius DSM 20547 |
Kingdom | Bacteria |
Replicon accession | NC_013169 |
Strand | - |
Start bp | 2164044 |
End bp | 2167529 |
Gene Length | 3486 bp |
Protein Length | 1161 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644992344 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_003149854 |
Protein GI | 256825894 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.81555 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGCTGCCT CGCGCACTGC TGACCAGAAC GTCTCGACCG CACGCACCGC TTCCGGGCGT CTGTCGTTCT CCCGCATCCA CGAGCCCCTC GAGGTCCCCG ACCTCCTGGC GCTCCAGACC GAGAGCTTCG ACTGGCTCCT CGGCAACGAG GCCTGGCAGG AGCGGGTCGC CGAGGCTTCG GCCGCAGGTC GCAACGACAC CTCCACCACC TCGGGTCTGG AGGACATCTT CGAGGAGATC TCCCCCATCG AGGACTTCTC GGAGACGATG TCCCTGAGCT TCTCCGAGCA CCGCTTCGAG GAGATCAAGT ACACCGAGGA GGAGTGCATC GAGCGGGACA TGACCTACTC GGCGCCCCTG TTCGTGACCG CCGAGTTCAT GAACGGCGAG ACCGGCGAGA TCAAGTCGCA GACCGTCTTC ATGGGCGACT TCCCGTTGAT GACCAAGCGC GGCACCTTCA TCATCAACGG CACCGAGCGT GTCGTGGTGT CCCAGATCGT GCGTTCCCCG GGCGTCTACT TCGAGCGCTC CATCGACCGC GCGACCGACA AGGAGGTCTA CTCCGCGAAG GTCATCCCCA GCCGTGGTGC GTGGCTGGAG TTCGAGGTCG ACAAGAAGGA CATGGTCGGC GTGCGCGTCG ACCGCAAGCG CAAGCAGTCC GTCACCGTCC TGCTCAAGGC CCTCGGCTGG ACCGAGGCGC AGATCCTCGA GGAGTTCGGC CAGTACGAGT CCATCCGCGC GACGCTGGAG AAGGACCACA CGGCCAACCA GGACGAGGCC CTGCTGGACA TCTACCGCAA GCTGCGCCCG GGGGAGCCGC CGACCGTCGA GGCCGCCCAG AACCTGCTGG ACAACCTCTA CTTCAACGGC AAGCGCTACG ACCTCGCGAA GGTCGGCCGC TACAAGATCA ACAAGAAGCT GGGCCTGGAC GCCCCGCTGA CCGACTCCAC GCTCAGCGTG GACGACGTGG TGCGCACCAT CAAGTACATC GTCGCGCTGC ACGCCGGCGA GACCACGATG GAGGGCGTCC GCCACGGCGA GGCCGTGGAC CTGCGGGTCG AGACCGACGA CATCGACCAC TTCGGCAACC GTCGTCTGCG CACCGTGGGT GAGCTCATCC AGAACCAGGT CCGCACCGGT CTGTCCCGCA TGGAGCGCGT CGTCCGGGAG CGCATGACCA CCCAGGACGT CGAGGCGATC ACGCCGCAGA CGCTGATCAA CATCCGTCCG GTCGTGGCGG CGATCCGCGA GTTCTTCGGC ACCAGCCAGC TCTCGCAGTT CATGGACCAG AACAACCCGC TGGCCGGGCT GACGCACAAG CGTCGCCTCA GCGCCTTGGG CCCCGGTGGT TTGTCCCGTG ACCGCGCCGG CATGGAGGTC CGCGACGTCC ACCCGTCGCA CTACGGCCGC ATGTGCCCCA TCGAGACGCC GGAAGGCCCG AACATCGGTC TGATCGGCGC CCTGGCCTCC TACGGGCGGA TCAACCCGTT CGGCTTCGTC GAGACCCCCT ACCGCAAGGT CAAGGGCGGC TTCGTCACCG ATGACGTGGA GTACCTGACC GCCGACGAGG AGGACGACTT CGTCATCGCG CAGGCCAACG CGCCGCTGAC CGAGGACGGC CAGTTCGCCG GTGAGCGCGT GCTGGTCCGC TCCAAGGGCG GCGAGGTCGA GTTCGTGCCG CGCGACGAGG TGCACTACAT GGACGTCTCG CCGCGCCAGA TGGTGTCCGC CGCCACGGCG ATGATCCCCT TCCTGGAGCA CGACGACGCC AACCGCGCCC TGATGGGCGC GAACATGCAG CGCCAGGGCG TGCCGCTGGT GAAGGCCGAG GCCCCGCTGG TGGGTACCGG CATCGAGTAC CGCGCCGCGC TGGACACCGG CGACGTCGTG CGTGCCGAGA AGGCCGGCGT CATCCAGTCG GTCTCCGCCG ACCTGGTGAC GGCGCAGAAC GACGACGGCA CCTACCAGAG CTACCGCATC GACAAGTTCA GCCGCTCCAA CCAGGGCACC TGCTACAACC AGCGGGTCGT CGTGGCGGCG GGTGACCACG TCGAGAAGGG CCAGCTGATC GCCGACGGCC CCTCCACCGA CAACGGTGAG ATGGCGCTGG GCAAGAACCT GCTCGTGGCC TTCATGCCGT GGGAGGGCTA CAACTACGAG GACGCGATCA TCCTGTCGCA GCGCCTCGTG CAGGACGACA CGCTCTCCTC GATCCACATC GAGGAGCACG AGATCGACGC CCGCGACACC AAGCTGGGCC CGGAGGAGAT CACGCGGGAC ATCCCGAACG TCTCCGACGA GGTGCTGGCC GACCTGGACG AGCGCGGCAT CATCCGCATC GGTGCCGAGG TCCGCGACGG CGACCTGCTC GTCGGCAAGG TCACGCCCAA GGGTGAGACC GAGCTGACCC CGGAGGAGCG CCTGCTGCGC GCCATCTTCG GCGAGAAGGC CCGCGAGGTG CGCGACACCT CCATGAAGGT GCCGCACGGC GAGACCGGCA CGGTCATCGG CGTGAAGGTC TTCGACCGCG AGGAGGGCGA CGAGCTGCCC CCGGGCGTGA ACCAGATGGT GCGCGTCTAC GTGGCCAACA AGCGCAAGAT CACCGATGGT GACAAGCTCG CCGGCCGCCA CGGCAACAAG GGCGTCATCT CCAAGATCCT GCCGGTCGAG GACATGCCCT TCCTGCCCGA CGGCACCCCG GTGGACGTCG TGCTGAACCC GCTGGGTGTG CCCAGCCGCA TGAACGTCGG CCAGGTGCTC GAGCTGCACC TCGGCTGGGC GGCTGCGAAC GGCTGGAAGA TCGAGGGCTC GCCCGAGTGG GCCGAGAACC TCGCCGAGGA GCACCGCGAG GCCGGCCCGT GGACCCGTGT GGCCACCCCG GTGTTCGACG GCGCCCGCGA GGAGGAGATC ACCGGCCTGC TCGACTCGAC GATCCCCTCG CGCGACGGTC AGCGCCTCAT CGACGGCTCG GGCAAGGCCC AGCTGTTCGA CGGCCGCACC GGTGAGCCGT ACCCGGAGCC GGTGTCCGTG GGCTACATGT ACATCCTCAA GCTCCACCAC CTGGTGGACG AGAAGATCCA CGCCCGCTCG ACCGGCCCGT ACTCGATGAT CACGCAGCAG CCGCTGGGCG GTAAGGCCCA GTTCGGCGGC CAGCGCTTCG GCGAGATGGA GGTCTGGGCC CTGGAGGCGT ACGGCGCCGC CTACGCCCTG CAGGAGCTGC TGACCATCAA GTCGGACGAC GTGACCGGCC GCGTGAAGGT CTACGAGTCC ATCGTCAAGG GCGAGAACGT CCCCGAGCCC GGCATCCCCG AGTCCTTCAA GGTGCTCATC AAGGAGATGC AGTCCCTGTG CCTGAACGTC GAGGTCCTCT CGACCGACGG CCAGAACATC GACCTGCGCG AGCAGGACCA GGAGGTCTTC CGCGCGGCGG AGGAGCTCGG CATCGACCTG AGCCGGCGGG AGCCGAGCTC GGTCGAAGAG GTCTGA
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Protein sequence | MAASRTADQN VSTARTASGR LSFSRIHEPL EVPDLLALQT ESFDWLLGNE AWQERVAEAS AAGRNDTSTT SGLEDIFEEI SPIEDFSETM SLSFSEHRFE EIKYTEEECI ERDMTYSAPL FVTAEFMNGE TGEIKSQTVF MGDFPLMTKR GTFIINGTER VVVSQIVRSP GVYFERSIDR ATDKEVYSAK VIPSRGAWLE FEVDKKDMVG VRVDRKRKQS VTVLLKALGW TEAQILEEFG QYESIRATLE KDHTANQDEA LLDIYRKLRP GEPPTVEAAQ NLLDNLYFNG KRYDLAKVGR YKINKKLGLD APLTDSTLSV DDVVRTIKYI VALHAGETTM EGVRHGEAVD LRVETDDIDH FGNRRLRTVG ELIQNQVRTG LSRMERVVRE RMTTQDVEAI TPQTLINIRP VVAAIREFFG TSQLSQFMDQ NNPLAGLTHK RRLSALGPGG LSRDRAGMEV RDVHPSHYGR MCPIETPEGP NIGLIGALAS YGRINPFGFV ETPYRKVKGG FVTDDVEYLT ADEEDDFVIA QANAPLTEDG QFAGERVLVR SKGGEVEFVP RDEVHYMDVS PRQMVSAATA MIPFLEHDDA NRALMGANMQ RQGVPLVKAE APLVGTGIEY RAALDTGDVV RAEKAGVIQS VSADLVTAQN DDGTYQSYRI DKFSRSNQGT CYNQRVVVAA GDHVEKGQLI ADGPSTDNGE MALGKNLLVA FMPWEGYNYE DAIILSQRLV QDDTLSSIHI EEHEIDARDT KLGPEEITRD IPNVSDEVLA DLDERGIIRI GAEVRDGDLL VGKVTPKGET ELTPEERLLR AIFGEKAREV RDTSMKVPHG ETGTVIGVKV FDREEGDELP PGVNQMVRVY VANKRKITDG DKLAGRHGNK GVISKILPVE DMPFLPDGTP VDVVLNPLGV PSRMNVGQVL ELHLGWAAAN GWKIEGSPEW AENLAEEHRE AGPWTRVATP VFDGAREEEI TGLLDSTIPS RDGQRLIDGS GKAQLFDGRT GEPYPEPVSV GYMYILKLHH LVDEKIHARS TGPYSMITQQ PLGGKAQFGG QRFGEMEVWA LEAYGAAYAL QELLTIKSDD VTGRVKVYES IVKGENVPEP GIPESFKVLI KEMQSLCLNV EVLSTDGQNI DLREQDQEVF RAAEELGIDL SRREPSSVEE V
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