| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Krad_0088 |
|---|
| Symbol | |
|---|
| ID | 5334688 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Kineococcus radiotolerans SRS30216 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009664 |
|---|
| Strand | - |
|---|
| Start bp | 2228223 |
|---|
| End bp | 2230433 |
|---|
| Gene Length | 2211 bp |
|---|
| Protein Length | 736 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001359843 |
|---|
| Protein GI | 152964059 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.779609 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0932297 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGTTCA GCCAGCCCCG GCCCCGCACC CGCGTGGCGG CCGTCTGCCT CGCGGTCCTC
GCCGTGGGGT CCGCCTTCGC GCCCGTGGGG GCGACGGCGT CGGCGGGGCT GCTGGCCGTC
GCCCACCTGA CCGCGGTCGC CGTCCTGGCC CTCGGCGCCC GCCGGCGCGC CGACGACGGG
GTGTGGCGCT CGTTCGCGGT GGCGGGCGCC CTCGTGGGCG TCCCGCCCGT GCTCGCCCTG
GTGACCGGTG GCCGCTCGCT CACGCCGCTC GGGGGGTGCC TCGTGGTCGC GATGCCCTTC
CTGTACCAGG CCCTGGTGCG CTGGAACCGC TACCGCACCT ACGTCTCCGA CCCCGGCGAC
TGGCTGAACT GGATCAGCGC CGTCCTGGCG TGCGCGGGGG CCGGGCTCCT CGTCCAGGAC
CGGGTGCCGT TCCTGCCCGC GGCCTGGCCC TCGTGGATGG TCCAGCTCTG GCTGCTCGTC
TTCGGCTCGC TGCTCATCCT GCTCGGCACC GCGGTCACCG TCGCCTGGAT CGGCGGTCTC
CTGCGCGACC GGCGCGTGTG GTTGGTCGTC GGCGCCCTGG GCGCGCTGAC CGTGGTCAGC
GGCACGCTGC GCGGGGACCC CGCCGACGCC CTGCACGGGC AGGCGGCGTG GACGCTGGCC
TTCCTGGTGA TCGCCTTCGC CTCCACCCGC GGGGGCCGGC ACGCCCCGGT GCCCGCGACC
AGCCAGGCGC CCGCGATCGG GGCCCTCGTC GTCCTCGCGC TGGCCGTGGG GGTCCTCGTC
GTGGACGGGC ACGAGGCCGG GTGGGTGGCC ACCGCCTACG CCGGCGTCGC CGTCCTCGGG
GTCAGCGTCC GGGTCGTGCA CCTCGTGCGG GAGCTGGCCC AGCTCGCGGA GTCGCGCCAG
CAGGCCCTCA CCGACGAGCT CACCGGGGTC GGCAACCGCC GCGCCCTGCT GCGCGTGCTG
GGCGGCCTCG TCGCCGACGG CCGGTCCGCC GCGCTGCTGC TGCTCGACGT CGACCGCTTC
AAGGAGGTCA ACGACCGGCA GGGCCACCAC GCCGGTGACG ACCTGCTCCG CCGGGTCGTG
GCCGCCACCC GGCGGGCCCT GCCCGCCGAC GCCGTGCTCA CCCGCACCGG CGGGGACGAG
TTCGCCGTCG TCCTGCCCGA CCGCGACGAG GCGTCGGCCG TGGAGGTCGC CCGCGCCGTG
CACGCCGCGG TCGTCGCCGA CGCCGAGATC GGCCTCAGCG TCGGGGTCCG CTCCCTGCCC
GCCGGCGGGT TCGACCCCGA CCGGCTGCTG CGCCAGGCCG ACACCGCCAT GTACGCGGCG
AAGACCGCCG GCGGCGGGGT CAGCGTCTAC GACGTCGACG TCGACGCCCG GCTGCGCGAC
CGCGCCGCGC TCGCCGCCGA CCTCAAGGCC CTCGTCGCCG CCGGGGAGGA GCGCCTGCGC
CGCGAGGTCG TCGTGCACTA CCAGCCGCAG CTCGACGTCG GCACCGGCCG GGTCGTGGGG
GCCGAGGCGC TGGTGCGCTG GCAGCACCCC CAGCGCGGGC TGCTGCCGCC GGTGGCGTTC
CTGGACCTCG TCGAGGAGCA GGGCCTCATG GACGACCTCA CCGAGCACCT GCTGCACCGG
GCGAGCGCGG ACGCGGCCGG CTGGAGCCAC CGCGGGTCCC CGCTGCGCAT CTCGGTGAAC
CTGTCCGCGT CCTCGCTGAC CCACCCCGGG CTGCTCGGCC TCGTCGACGA CGTCCTGGAG
CGCAGCGGCC TGGCCGCGGG CCGCCTCGTC CTGGAGGTCA CCGAGACGAC GCTGATGGCC
GACCCGGACC TGGCGCTGGC CGTCACCCGC GAGCTGACCC GGCGGGGGGT GCAGCTGAGC
ATCGACGACT ACGGCACGGG GTACTCCTCG CTGGCCTACC TGACCGACCT GCCGGCCACG
GAGCTGAAGC TGGACCGCGC CTTCACCGCG CGGGTCCTCG CCGAGCCCCG CACGGCCGAG
ATCGTCGAGG CCACGGTGGC GCTGGCGCAC CGGCTGGGGC TGCGGGTGGT GGCCGAGGGC
GTCGAGGACG AGTCGACCCG CGCGGCGCTG GGTGGGCTGG ACGTCGACGA GTCGCAGGGC
TACCTGCACT CGCGCCCGCT GCCGCCGGCC GCCTTCGCGG CGTGGCTGGC CGCGGCGGGC
GCGGCCCAGG TCGTGGGGGC GGCCGGGTCC ACCGACGCCC CGTCCCGCTG A
|
|---|
| Protein sequence | MTFSQPRPRT RVAAVCLAVL AVGSAFAPVG ATASAGLLAV AHLTAVAVLA LGARRRADDG
VWRSFAVAGA LVGVPPVLAL VTGGRSLTPL GGCLVVAMPF LYQALVRWNR YRTYVSDPGD
WLNWISAVLA CAGAGLLVQD RVPFLPAAWP SWMVQLWLLV FGSLLILLGT AVTVAWIGGL
LRDRRVWLVV GALGALTVVS GTLRGDPADA LHGQAAWTLA FLVIAFASTR GGRHAPVPAT
SQAPAIGALV VLALAVGVLV VDGHEAGWVA TAYAGVAVLG VSVRVVHLVR ELAQLAESRQ
QALTDELTGV GNRRALLRVL GGLVADGRSA ALLLLDVDRF KEVNDRQGHH AGDDLLRRVV
AATRRALPAD AVLTRTGGDE FAVVLPDRDE ASAVEVARAV HAAVVADAEI GLSVGVRSLP
AGGFDPDRLL RQADTAMYAA KTAGGGVSVY DVDVDARLRD RAALAADLKA LVAAGEERLR
REVVVHYQPQ LDVGTGRVVG AEALVRWQHP QRGLLPPVAF LDLVEEQGLM DDLTEHLLHR
ASADAAGWSH RGSPLRISVN LSASSLTHPG LLGLVDDVLE RSGLAAGRLV LEVTETTLMA
DPDLALAVTR ELTRRGVQLS IDDYGTGYSS LAYLTDLPAT ELKLDRAFTA RVLAEPRTAE
IVEATVALAH RLGLRVVAEG VEDESTRAAL GGLDVDESQG YLHSRPLPPA AFAAWLAAAG
AAQVVGAAGS TDAPSR
|
|---|
| |