Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jden_2540 |
Symbol | |
ID | 8381693 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jonesia denitrificans DSM 20603 |
Kingdom | Bacteria |
Replicon accession | NC_013174 |
Strand | + |
Start bp | 2729884 |
End bp | 2730546 |
Gene Length | 663 bp |
Protein Length | 220 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 645005305 |
Product | transcriptional regulator, TetR family |
Protein accession | YP_003162475 |
Protein GI | 256833748 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.34282 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTGACA ACACACCACG CTCCACATCG AGAGCCCCAC GAACCGCACC AGACGAACGG ATGCGCGACA TCACAAACGC CGCACGCCGC CTCTTTGCCA CCCGTGGGAT CGCACGCACC TCCTTCACCG ACCTCGCCCG TGAAGTCAAA GTCGCCCGTG GCCTCATCTA CCACTATTTC CCCGACAAAG ACGCCATTGT CGATGCGGTC CTCGCCGACT ACATCTCCGA GTTCGTGCGC GCCGTCGAAG AATGGGACGC CGCCCGAGAG CCCGGCAACA TCGACAAAGC ACTGAAAGAC TGCATCACGG TTTTTCGCAC CCACATGAGG TCCATGGACC CCATGCACAC CGAACTCCAG CGAGTAGAAA ATACAGGTCT CTACAACCGC TTCCTCCACC GCGCTGTCAC CGCCATCGTT GACTGCCTCG AACTCACCAC CATCGAGGCG TACGCCGCAC GACACAAAAT CGAAATCTCT CACGTCCGCG AAACGTTCTA TGTTCTCATT TACGGGCTTG TTGGACTTTC CCGGAATAAC CCTGCGGTCG GCGACGACGT CCTCATCGAC ATCACCCGCC AAATTCTGCG GCTGCCACCC GCACGTCTGA CAACACTTGA GCCTCGGCAC ACACCTCACG GGGAGCCGCC TATGCCGGGC TAA
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Protein sequence | MADNTPRSTS RAPRTAPDER MRDITNAARR LFATRGIART SFTDLAREVK VARGLIYHYF PDKDAIVDAV LADYISEFVR AVEEWDAARE PGNIDKALKD CITVFRTHMR SMDPMHTELQ RVENTGLYNR FLHRAVTAIV DCLELTTIEA YAARHKIEIS HVRETFYVLI YGLVGLSRNN PAVGDDVLID ITRQILRLPP ARLTTLEPRH TPHGEPPMPG
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