| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_2218 |
|---|
| Symbol | |
|---|
| ID | 8381376 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 2403234 |
|---|
| End bp | 2405819 |
|---|
| Gene Length | 2586 bp |
|---|
| Protein Length | 861 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 645004978 |
|---|
| Product | DEAD/DEAH box helicase domain protein |
|---|
| Protein accession | YP_003162158 |
|---|
| Protein GI | 256833431 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.344745 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCTCTG GCACGGCTTG TGCGTGTACG GAGCGCACAA CAGACAATGG TGAGATGCCT
CGACTTGATG AACTAGTGGA TGCGCTCACC GCTGGTGGGC GTCGAACAGA CCGCATGTGT
CATGTGGAGC ATCGTGCTGC CCGTCCGGCG CAGCACTCAG CGTGGCCCCA GTGGGTTCAT
CCTGCGGTTC GTCAGGCGCT CACTGTGCGC GGAGCATCTT CCGCATGGAC GCATCAGGCA
ACAGCTGCCC AAGCAATTCA CGACGGGCAT CACGTTGCGC TTGCCACCTC CACTGGGTCC
GGGAAGTCGC TGGCTTTTTG GGTTCCTGCC CTCACATCGA TTATGTCGAC CAGGAGCGGC
GGGTCGATTT CCCGGCACCG GGATAGGGCT ACCGCCTTGT ACCTCGCTCC AACGAAGGCG
CTGGCTCACG ACCAGCTCGC TGCGTTGCAG AAGCTTCTGT CAGCGGGGGG TCTTGATTCG
GTGCGGGTCG ATGCGGTAGA TGGTGATACG TCCTTTGATG AGCGACGTTG GGTTCAAGCG
CACGGGGACA TTATCCTGAC GAATCCCGAT TTCCTTCATT ACGCACTACT GCCAGGGCAT
GAGCGATGGT CGCGTTTTTT GCGTGGGTTG GAGTTCCTCA TTATTGATGA GGGCCACACT
TATCGCGGGG TGTTTGGCGC GCATGTGTCG TTGATTGTGC GGCGGTTGCA ACGACTCGTT
GCGCACTATC GCGGCGGTCG CATGCCTGTT GTGGTGGTGG CATCAGCGAC GTCTGCCCAC
CCGCAGCAGT CGGCAGCACG GCTCATTGGG GTCAGTGAGG ATGAGGTTGT TGCGGTCACC
GAGGATGGGT CACCTTCGGG GCGTCAAACG ATTGTGTTGT GGCAACCACC GCAGCGAGAA
TCTGGGTTCA CCCAGGCACC CTCGGATGTG GTTCCCGGCG TGGTTGACGA GTTAACGGGT
GGGTGGGATC ACAGCGTCGA TGATGACCTT ACTGGCGGGG CTGATGACCT GTCGGGGGTG
ATTACCGATG CGCCTGTCCC GTCCCAGCCT CGGCGTCCGG CCACTGCGGA GGCCGTTGAC
CTGTTGGCGG ATCTCACCGC GCATGGCGCT CGGACGTTGG CGTTCACCCG GTCGCGCCGG
GCGGCGGAGT ATCTCGCTGT TCATACTCGG GATGAGTTGT TGATGTCGGT CCCTCAGCTG
GCGGACAGTG TTGCTGCGTA TCGGGGTGGG TTTCTTCCTG AGGAACGTCG TGCGCTTGAG
GCGGGGGTGC GTTCGGGGTC GATTCGGGCG TTAGCTTCCA CGAATGCGCT GGAGATGGGG
ATTGATATCT CTGGGCTTGA TGTGGTGCTC ATTGTGGGAT GGCCGGGGAC TCGGATGTCG
TTGTGGCAGC AGGCTGGGCG GGCAGGGCGT GCTGGTAGTG ATGGTTTGGT TGTGTTCATT
GCACGTGAGG ATCCGTTGGA TACGTATGTG GTGTCACATC CGGAGGCAAT TTTTGGCGCA
CCGTTAGAGG CGACGGTTTT TGACCCCACA AACCCGTATG TGTTGGGAGG GCATCTATGT
GCTGCGGCAG CTGAGTTGCC GGTGACGGAG GCGGATCTGA CGCTGTTTGG TGGATGTCGA
GCCCGGGAGG TTCTTGATCA GTTGGTGGAT CGGGGTACGC TTCGACGCCG CCCGCGAGGT
TGGTACTGGG TTCATGATGA GCCTGCGGCG CAGTTCACGT CGATTCGTGG GGATGGTCAG
CATGTGGTGC AGGTGGTGGA ACGTTCCACC GGGCGATTGT TGGGCACTGT TGATGCGGGG
GCTGCTGATG GGCAGGTGCA TGACGGCGCC GTGTATACGC ATGGTGGGAG CACTTTTGTG
GTGGCGCACT ACGACGTGGA CAACCATGTG GCGTTGGTGG ATCAGGAGGT TGTGGCTTAT
TCGACGTGGT CGCGTGATGT CACCTCGATT GAGATTGTGA GCACGGCCAG TGAACGTGTG
GTTCCAGCCG AGGTGGCGGG TGACCCGGCG CTCGTTGAGT GGGGTTTTGG TCAGGTGAAT
GTGCATGGGC AGGTGACTGG GTTCACTCGC AGACGTGTTC CCAGCGGTGA GGTGTTGGGG
CATGAGTCGT TGGATTTGCC GGTGCGAACA TTGCCGACTG CGGCCGTGTG GTGGTCAGTG
AGCACGGCTG TGTTGGAGCG GGCAGGGCTT GCTGTTGAGG AGGTCCCTGG TGCGTTGCAT
GCTGCTGAGC ATGCGGCGAT TGGGTTGTTG CCGTTGTTGG TGACGTGTGA CCGGTGGGAT
TTGGGTGGGG TTTCCACTGC GATTCACCCT GATACGGAGC GGGCAACCGT GTTTGTGTAT
GACGCGCTTC CTGGTGGGGC GGGTTTTGCT GAGCAGGGGT TCGCGCGGGG GCGTGAGTGG
TTGTTGGCGA CGCGTGATGC GGTGGCGCGT TGTCAGTGTG TGGATGGGTG CCCAAGTTGT
GTGCAGTCAC CGAAGTGTGG GAATGGGAAT AGCCCCCTCA GTAAGGAGGG GGCTATTCGG
TTGCTGACTG TGTTACTTGA GGTTGACGTC GGTGAGTTGT CGCCTGCCGA TGCGCCATTT
GCGTGA
|
|---|
| Protein sequence | MTSGTACACT ERTTDNGEMP RLDELVDALT AGGRRTDRMC HVEHRAARPA QHSAWPQWVH
PAVRQALTVR GASSAWTHQA TAAQAIHDGH HVALATSTGS GKSLAFWVPA LTSIMSTRSG
GSISRHRDRA TALYLAPTKA LAHDQLAALQ KLLSAGGLDS VRVDAVDGDT SFDERRWVQA
HGDIILTNPD FLHYALLPGH ERWSRFLRGL EFLIIDEGHT YRGVFGAHVS LIVRRLQRLV
AHYRGGRMPV VVVASATSAH PQQSAARLIG VSEDEVVAVT EDGSPSGRQT IVLWQPPQRE
SGFTQAPSDV VPGVVDELTG GWDHSVDDDL TGGADDLSGV ITDAPVPSQP RRPATAEAVD
LLADLTAHGA RTLAFTRSRR AAEYLAVHTR DELLMSVPQL ADSVAAYRGG FLPEERRALE
AGVRSGSIRA LASTNALEMG IDISGLDVVL IVGWPGTRMS LWQQAGRAGR AGSDGLVVFI
AREDPLDTYV VSHPEAIFGA PLEATVFDPT NPYVLGGHLC AAAAELPVTE ADLTLFGGCR
AREVLDQLVD RGTLRRRPRG WYWVHDEPAA QFTSIRGDGQ HVVQVVERST GRLLGTVDAG
AADGQVHDGA VYTHGGSTFV VAHYDVDNHV ALVDQEVVAY STWSRDVTSI EIVSTASERV
VPAEVAGDPA LVEWGFGQVN VHGQVTGFTR RRVPSGEVLG HESLDLPVRT LPTAAVWWSV
STAVLERAGL AVEEVPGALH AAEHAAIGLL PLLVTCDRWD LGGVSTAIHP DTERATVFVY
DALPGGAGFA EQGFARGREW LLATRDAVAR CQCVDGCPSC VQSPKCGNGN SPLSKEGAIR
LLTVLLEVDV GELSPADAPF A
|
|---|
| |