Gene Jden_1347 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJden_1347 
Symbol 
ID8380524 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJonesia denitrificans DSM 20603 
KingdomBacteria 
Replicon accessionNC_013174 
Strand
Start bp1441762 
End bp1443432 
Gene Length1671 bp 
Protein Length556 aa 
Translation table11 
GC content56% 
IMG OID645004096 
Producttype II secretion system protein E 
Protein accessionYP_003161306 
Protein GI256832579 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 
TIGRFAM ID[TIGR02538] type IV-A pilus assembly ATPase PilB 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAACAAC TGGGAGAAAT CCTCCTCGAA GAGGGTCTGG TCACCGAAGA CGAACTCCTT 
CGTGCGCTGG ACGAACAGAT TGCGCGCGGT ACGAGCCTGG GGCGCGTGCT GGTGGAACTG
GGTGTGCTCA CAGAGAACCA ACTCGTGGCG GCCCTAGCCC AGCAAGTGGG GATGCGCTTC
GTAGACCTTG ACGATTATGC GGTCGACAGA GCCGCTGTTG TGAAAGTGCC CGGACCTGTG
TGCCAGCGCT ACAACGTCCT TCCTATTGCG ATTGACAACG GTCAACTCAT TTTGGCCATG
GCCGACCCAG GGAACGTGCT CGCAATTGAC GATGTTCGCC AAGTCGCGCA AATGCCTGTG
CAACCTGTCG TGTCGACACA CGAAAACCTC GCCAGGGCAC TCCAACGGTA CATCCGCGCT
GACGGCGAAA TGGATGACCT TGCTCACGCG CTTTCTGAAG AGCAAGAAGA AGAAATTGAC
CTTTCCGCAC TCGGTGACTC GGTCGAGGAC GACGCGCCCA TTGTTCGATA CGTGAACCTG
GTCGTCACCC AGGCGATCAC GGACCGCGCG TCAGACATCC ACATTGAGCC AACGGAACAC
GACCTTCGAG TGCGCTACCG CATCGATGGT GTGTTGCACG AGATGCAACG TTCTCCGAAG
TCCACGCAGA ATGCAGTGAC CTCCCGTGTG AAGATTCTCG CTGACATTGA TATTGCTGAG
CGCCGAAAGC CTCAGGATGG TCGCATGTCG GTCAACCATA AGGGGCGCAA AATTGACCTG
CGTGTGGCGA CGCTTCCCAC TGTGTGGGGC GAGAAAATCG TCATGCGTAT TCTCGATAAC
TCCACCGCCT CACTCGATTT GCGTGACCTT TCATTCGGCG AAGCGAACCT CGAGATTTAC
AAAGAGTCCT ATAACAAGCC GTACGGGATG ATCCTCGTGA CTGGGCCAAC GGGGTCGGGT
AAATCGACAA CACTGTACGC CACGCTCAAT GCAGTATCGA AGCCCGAAAT CAACGTGATC
ACGGTGGAAG ACCCTGTTGA ATACCGGCTT CCGGGCATTA ACCAAGTACA GGTGAACCCG
AAGTCCGGGC TGACCTTCGC TGCAGCGTTG CGTTCTATTT TGCGTTCGGA CCCGGATGTT
GTTCTTCTTG GTGAGATCCG TGACCACGAA ACCGCTCAAA TCGCTATCGA GGCAGCTCTC
ACCGGTCACC TCGTGTTATC CACTTTGCAC ACCAATGACG CACCGTCAGC TGTCACTCGT
CTCACTGAGA TGGGGATCGA ACCGTTCCTT GTGGGATCGG CACTGGACTG TGTGGTTGCT
CAACGGTTAG CACGGAAACT GTGTGACAAG TGCAAGGAAC CGTACCAACC ATCTGAGCGG
GAAATGATTG CCGCGAAGTT CCCGTGGGTT CCCGGCGAAG AAATTCCGAC ACTGTACCGG
CCAGGTGGTT GTGCAACATG TTCGCGGACC GGGTACCGCG GCAGGTTGGC TCTCCATGAG
GTCATGCAAG TCAACGAGGA TATTGAACGT CTTGCTGTTG CGCGGTCATC CGCCGCTGAA
ATTAGCTCGA CAGCCCAGAA AAACGGGATG TATACGCTGC GTGAAGACGG ATGGATGAAA
GTCGTTGAAG GAAAGACATC CATTGAAGAA GTGCTGCGTG TCGTGGCGTG A
 
Protein sequence
MKQLGEILLE EGLVTEDELL RALDEQIARG TSLGRVLVEL GVLTENQLVA ALAQQVGMRF 
VDLDDYAVDR AAVVKVPGPV CQRYNVLPIA IDNGQLILAM ADPGNVLAID DVRQVAQMPV
QPVVSTHENL ARALQRYIRA DGEMDDLAHA LSEEQEEEID LSALGDSVED DAPIVRYVNL
VVTQAITDRA SDIHIEPTEH DLRVRYRIDG VLHEMQRSPK STQNAVTSRV KILADIDIAE
RRKPQDGRMS VNHKGRKIDL RVATLPTVWG EKIVMRILDN STASLDLRDL SFGEANLEIY
KESYNKPYGM ILVTGPTGSG KSTTLYATLN AVSKPEINVI TVEDPVEYRL PGINQVQVNP
KSGLTFAAAL RSILRSDPDV VLLGEIRDHE TAQIAIEAAL TGHLVLSTLH TNDAPSAVTR
LTEMGIEPFL VGSALDCVVA QRLARKLCDK CKEPYQPSER EMIAAKFPWV PGEEIPTLYR
PGGCATCSRT GYRGRLALHE VMQVNEDIER LAVARSSAAE ISSTAQKNGM YTLREDGWMK
VVEGKTSIEE VLRVVA