Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jden_1346 |
Symbol | |
ID | 8380523 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jonesia denitrificans DSM 20603 |
Kingdom | Bacteria |
Replicon accession | NC_013174 |
Strand | - |
Start bp | 1439973 |
End bp | 1441673 |
Gene Length | 1701 bp |
Protein Length | 566 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 645004095 |
Product | twitching motility protein |
Protein accession | YP_003161305 |
Protein GI | 256832578 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCGAAA ACTTCCAACA ACCGCGGGAA CAAGCGAGCC CGCAACAGGT GAGCGAGTGG GCTGAACAAG CAAATATGTC GCAATTATTT GCGCGTGAGT TGTCACGTGG GTCAATTCCG CGTCCGGCTG CTTCGTACGA AGAATACGGG GGCTTCACCG AGGAACAAGT ACCTACTCGA TCTGCTGACC CAGGGGAGGG GAGACGTGCC GCGACCTCTG TGACACCACT TCGCCGTCCC GCAGAGTCCC CGAATGCCCA CTACGTTCAG GCTCCCGTGT CTATTCCTGC TGCTGCACAA CCGCCGATGA TGCAGGGCGG GACTGCAGGA ACGAGCTTCG TCGATGAACA ATCTATGGTT CAGGCTGCGG GGGCGCCGGC GAACCCGTTT GGGCACCAGG CTCCACCGTC GTTCGCGAAC GTTCCTGGTG CGCCTCCCAC GGTTGCGCCT GCTGCGGGCG CCGCGTCTCA TGACGCAGTA TCACCAACGC GCCGTGGACG GGGAATTGTC CAAGCAGATC AAGCAGCTGC TGGGCGCGTG GGTATGTCGA ACGCGTTGCG TAAAGGTGAC CTCATCCTTG ACGATGTGCT GAGGGACATG GTCGTGCAAG ATGCCTCTGA TCTTCACTTG ACCAACCGGT CGCGGCCAAT GATCAGGAAA GCCGGTGAAC TCACGCCACT TGAAGGATAC GACGACCCGC TTGATGCCGA TGCACTACGT CGGTCAATTT ATACGCTGCT CACCCAGAAG CAGCGGGAAC AGTTTGAAGA AGCACTGGAA CTCGACTTTG CCTACCAAGT CCCTGATGGG GCGAGGTTCC GTGTCAATTT GTATCATCAA CGTGATTCTG TGGGCGCGGC ATTCCGTGTG ATTCCAACGG AGATCAAACC GCTTGAGGAC CTGGGAGTTC CTCCGTCGGT CGGGGCTTTC GCAAAACTTG CGCGTGGTTT GGTTCTTGTG ACTGGTCCAA CTGGGTCCGG TAAATCGACA ACATTGGCGT CAATTATTGA CTTGGTGAAC AGGTCCCGGG CTGACCACAT CATGACCGTT GAAGACCCGA TTGAGTTCTT GCATGAGCAC AAAAAGTGCG TGGTCAACCA ACGGGAAGTG GGCACTGACA CACATTCATT TGCTTCGGCG TTGAAGCATG TGTTGCGTCA GGACCCAGAC ATCATTCTTG TGGGCGAGCT TCGTGACCTG GAAACAATTT CTATTGCTCT CACCGCAGCA GAGACAGGGC ACCTGGTCTT TGCCACACTG CACACACAGG ATGCTGCGCA GACTATTGAC CGTGTCATTG ACGTCTTTCC TCCCGAACAG CAAGAACAGA TCCGAGTACA GCTTGCGTCA GCGATCCAGG GCGTGGTGTG TCAGACGTTG TGCAAACGCG CAGATGGTCC GGGGCGGGTT GTCGCGACTG AGGTTCTTGT GGCCACACCA GGTATCCGCA ACATGATCCG TGAAGGTAAG ACCCACCAAA TTTATTCGTC GATGCAGGCC GGGAAGAACG ATGGGATGCA TACCATGGAT CAGCACCTCG CTGACCTGAC AAAACGTGGA TCAATTAGTT ACGAAGTCGG TTTGGAAAAG TGCCACAGTG CCGCTGACTA CAACAGGCTT TCTGGACGGT CCTCGCTTCC AGTGGGGTCA GGAATCGCGA ATGCGGGCAT GGGTGGACAC CTTGACGGGA GTAGCTTCTA A
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Protein sequence | MTENFQQPRE QASPQQVSEW AEQANMSQLF ARELSRGSIP RPAASYEEYG GFTEEQVPTR SADPGEGRRA ATSVTPLRRP AESPNAHYVQ APVSIPAAAQ PPMMQGGTAG TSFVDEQSMV QAAGAPANPF GHQAPPSFAN VPGAPPTVAP AAGAASHDAV SPTRRGRGIV QADQAAAGRV GMSNALRKGD LILDDVLRDM VVQDASDLHL TNRSRPMIRK AGELTPLEGY DDPLDADALR RSIYTLLTQK QREQFEEALE LDFAYQVPDG ARFRVNLYHQ RDSVGAAFRV IPTEIKPLED LGVPPSVGAF AKLARGLVLV TGPTGSGKST TLASIIDLVN RSRADHIMTV EDPIEFLHEH KKCVVNQREV GTDTHSFASA LKHVLRQDPD IILVGELRDL ETISIALTAA ETGHLVFATL HTQDAAQTID RVIDVFPPEQ QEQIRVQLAS AIQGVVCQTL CKRADGPGRV VATEVLVATP GIRNMIREGK THQIYSSMQA GKNDGMHTMD QHLADLTKRG SISYEVGLEK CHSAADYNRL SGRSSLPVGS GIANAGMGGH LDGSSF
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