Gene Jden_1186 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJden_1186 
Symbol 
ID8380363 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJonesia denitrificans DSM 20603 
KingdomBacteria 
Replicon accessionNC_013174 
Strand
Start bp1259391 
End bp1261040 
Gene Length1650 bp 
Protein Length549 aa 
Translation table11 
GC content63% 
IMG OID645003931 
ProductDNA repair nucleotidyltransferase/DNA polymerase 
Protein accessionYP_003161145 
Protein GI256832418 
COG category[L] Replication, recombination and repair 
COG ID[COG0389] Nucleotidyltransferase/DNA polymerase involved in DNA repair 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000707508 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0119021 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCTGACT GGCCTGTCAT CGTTGCGCTC GCCCTTGCCC ACCTGCCACC CCACACACCA 
GCGATCACCG TGTCCGGCAC TCGTATCACT GCCGCCTCTG CCTTCGCCCG CGCAGCGGGT
GTGCGCACCA CCATGGCTCT GCGTCACGCC CAAGAAACTC TGCCCACCCT CACCTGCCTC
CCCACACCAC CCACCGACAT CCTTGCCCGC GAACACGAAC GCATCGCCCA GGTCCTTGAC
TCTTTCCTTG CCCACCTGAC CGTGCTGCGC CCCGGCCTCA CTCTTGCCCC CATTGACGGT
GCGCTACGCC ACTACCCTGA CCCGCCAACC TTCCTCGCTG CCGTCACTGA TGCGATCACT
GACACCACCG GGATAGACCC CTGGGCGGGC ATCGCTAACG GCACCCTGCC CGCTATCCTC
GCCGCTCGGC GCGGGCGCAT CCTCACCCCC GATGAATCTT TGCCCTTTAT CCAGACCCAC
CCCTTACACA CCCTGCGTTA CACCACCACT GCCCCCACCC CCGACCCTGA ACTCACTGAC
CTGCTCGCGT TGTGGGCAAA ACTTGGTCTG CACACCTACG CAGACCTCGC CTCGTTGCCA
CCCACCGATA TAGCCACCCG ATTTGGTGCA CGCGGCATGT GGGCATACCA CATCGCCATC
GGACGGGAAG AACCACTGGT CAGCCAGGAC CGTAACGAAC CAGATATCAC GGTCTCCTCC
ACATTTGACG AACCCCTCCA CCGGGCAGAT ACCGCCGCGT TCTACGCCAA ACAGTTGGCC
AGCCAGTTAC GGGAACAACT CGTGAAACAA GGATTGAGCG CCTACGAACT CCGGGTATCT
GCCCGCACAA ATGAACGGAT ACTGACCCGC ACCTGGCGTG CAGACCCCAC CATGGTGGGA
GCACTGAGCG AACACGCCAT CACACAACGG GTGCGCTGGC AGTGCGATGG GTGGCTCAGC
GCATCGGCGA TCTGCCCGCA TACCCCAAAG GTGGGACCGC TTGACATGGT GGAACTCACC
GCAGTTCGAG TGATCCCCGC CGGACACCAC CACCCCACAC TCTGGGGGGC AGACAACACA
GACAACGACC ACACCCGGCG CCTCGTGGAA CGCCTCAGTT CCCTGGTTGG ACCTGATGGT
GTTGTTGTCC CTCGCATCAC AGGAGGACGA ACCCCCGCCG ACCGAGTGAC CTACGTTCCC
TGGGATCAGG AGGTCACAAC AACCCATGGC GGTGCGCCAC ACACCCACGT GAGCGCGCTC
GCAGGTGTTG AGGAGTTGCC GTGGCCAGGG CGTCTTCCTG CTCCTGCCCC GTCAGTGACG
GGGGAGCCGG TGAAGGTGTG GGTGCGTGAC CCGGCAGGAC GTGAGGTGAG AGTAGATGAT
CTCGGGGCAT TGGTGTCTCC GCCCTACCGG TGGTGCACTG CAGGTGTTCC TCTTCCAGGC
ACTGAACACG TCAGTGGGGG AGTGGGGGAT CATACGGTCA CTCAGTGGTC AGGTCCATGG
GTGCTTTCTC CTGCCTGGTG GGCCATGTCA TCGTCCTTTG ATTCGCCAGG GGAGTCGCAG
GCTTACCTGC AGTTAATGAG TGATTCTCAT CCGCCCATTA TGGTGGTTCT CCGCGGGCGC
ACCTGGTGGT GGGAGGGGAC TTATGAGTAG
 
Protein sequence
MPDWPVIVAL ALAHLPPHTP AITVSGTRIT AASAFARAAG VRTTMALRHA QETLPTLTCL 
PTPPTDILAR EHERIAQVLD SFLAHLTVLR PGLTLAPIDG ALRHYPDPPT FLAAVTDAIT
DTTGIDPWAG IANGTLPAIL AARRGRILTP DESLPFIQTH PLHTLRYTTT APTPDPELTD
LLALWAKLGL HTYADLASLP PTDIATRFGA RGMWAYHIAI GREEPLVSQD RNEPDITVSS
TFDEPLHRAD TAAFYAKQLA SQLREQLVKQ GLSAYELRVS ARTNERILTR TWRADPTMVG
ALSEHAITQR VRWQCDGWLS ASAICPHTPK VGPLDMVELT AVRVIPAGHH HPTLWGADNT
DNDHTRRLVE RLSSLVGPDG VVVPRITGGR TPADRVTYVP WDQEVTTTHG GAPHTHVSAL
AGVEELPWPG RLPAPAPSVT GEPVKVWVRD PAGREVRVDD LGALVSPPYR WCTAGVPLPG
TEHVSGGVGD HTVTQWSGPW VLSPAWWAMS SSFDSPGESQ AYLQLMSDSH PPIMVVLRGR
TWWWEGTYE