| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_0948 |
|---|
| Symbol | |
|---|
| ID | 8380125 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 1002411 |
|---|
| End bp | 1003442 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 645003688 |
|---|
| Product | DNA glycosylase/AP lyase, H2TH DNA-binding |
|---|
| Protein accession | YP_003160907 |
|---|
| Protein GI | 256832180 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0266] Formamidopyrimidine-DNA glycosylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGAAG GTCACACCGT CCACCGACTC GCCCGCACGT TCGCAAACGT TTTCGGGGGA
CACACAGTTC ACGTCACCAG CCCACAAGGA CGGTTTGAAC AAGGAGCTGC GCTCCTCAAC
GGAGCGCAGC TCGTTCACGC CCAAGCCTAC GGAAAACACC TGTTCCTTGG GTTTACTCCC
ACACCAAACA AAACCAACGT CACCCACACG GACGAACCAC CACCCGAATC ACTGCGGTGG
TTGCGCGTCC ACCTAGGTCT CTACGGTTCC TGGACCTTTG CCGCCCACCC CAACACCCCC
ATCGCGCACG CCATTGGGGC ACCACGGCGG CGCATCGGCG AACGCGAACA CAACCTCACC
CCCGACCAAC CAGAGCCCCA CGACACCTGG ACCATACCCG AACCCCGCGG ACAAGTTCGC
GTCCGCATCG CCACCGCACA CGCGGTCGCT GACCTCACCG GACCAACCGC ATGTGAAGTG
CTCACCTACG AACAAACCCG CCATCACATC AACCAACTTG GCCCCGACCC CATTCGAGAC
GACGCCGACC CCCAACGATT CCTCACCGCG GTCAACCGGT CCCGCAGCGC AATCGGAGGC
CTTCTCATGA ACCAAAAAAC CATCGCCGGT GTCGGCAACA TTTACCGAGC AGAAGCACTA
TTTCGTGCAC GACTATCCCC CTACACACCA GGCAACACGA TCCCAACGCA CACCCTCACC
GCACTGTGGA ACGACCTTGT CACCCTCATG CGGCAAGGAG CCCACACCGG AGCGATCGTC
ACCACTCACT CCGCAGACCG AAACACCACA CCACCTGCCC CCAACAACCC ACGCAGCCGC
ACACGACAAA ATACTGACCA CACACCCGAC GCCATCCCCA CCGACCAGGC GTTCTACGTC
TACCAACGCC ACGGTCAACC ATGCCGACGC TGTGGGACAC CCATCGCGCT CGCGGACATG
CAAGCCCGCA AACTCTACTG GTGCCCCACA TGCCAATCAA CCAGTGGTGA GGTGCTAGAA
CACCCAGCTT GA
|
|---|
| Protein sequence | MPEGHTVHRL ARTFANVFGG HTVHVTSPQG RFEQGAALLN GAQLVHAQAY GKHLFLGFTP
TPNKTNVTHT DEPPPESLRW LRVHLGLYGS WTFAAHPNTP IAHAIGAPRR RIGEREHNLT
PDQPEPHDTW TIPEPRGQVR VRIATAHAVA DLTGPTACEV LTYEQTRHHI NQLGPDPIRD
DADPQRFLTA VNRSRSAIGG LLMNQKTIAG VGNIYRAEAL FRARLSPYTP GNTIPTHTLT
ALWNDLVTLM RQGAHTGAIV TTHSADRNTT PPAPNNPRSR TRQNTDHTPD AIPTDQAFYV
YQRHGQPCRR CGTPIALADM QARKLYWCPT CQSTSGEVLE HPA
|
|---|
| |